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Open Access In Situ Height and Width Estimation of Sorghum Plants from 2.5d Infrared Images

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Plant phenotyping, or the measurement of plant traits such as stem width and plant height, is a critical step in the development and evaluation of higher yield biofuel crops. Phenotyping allows biologists to quantitatively estimate the biomass of plant varieties and therefore their potential for biofuel production. Manual phenotyping is costly, time-consuming, and errorprone, requiring a person to walk through the fields measuring individual plants with a tape measure and notebook. In this work we describe an alternative system consisting of an autonomous robot equipped with two infrared cameras that travels through fields, collecting 2.5D image data of sorghum plants. We develop novel image processing based algorithms to estimate plant height and stem width from the image data. Our proposed method has the advantage of working in situ using images of plants from only one side. This allows phenotypic data to be collected nondestructively throughout the growing cycle, providing biologists with valuable information on crop growth patterns. Our approach first estimates plant heights and stem widths from individual frames. It then uses tracking algorithms to refine these estimates across frames and avoid double counting the same plant in multiple frames. The result is a histogram of stem widths and plant heights for each plot of a particular genetically engineered sorghum variety. In-field testing and comparison with human collected ground truth data demonstrates that our system achieves 13% average absolute error for stem width estimation and 15% average absolute error for plant height estimation.

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Document Type: Research Article

Publication date: January 29, 2017

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  • For more than 30 years, the Electronic Imaging Symposium has been serving those in the broad community - from academia and industry - who work on imaging science and digital technologies. The breadth of the Symposium covers the entire imaging science ecosystem, from capture (sensors, camera) through image processing (image quality, color and appearance) to how we and our surrogate machines see and interpret images. Applications covered include augmented reality, autonomous vehicles, machine vision, data analysis, digital and mobile photography, security, virtual reality, and human vision. IS&T began sole sponsorship of the meeting in 2016. All papers presented at EIs 20+ conferences are open access.

    Please note: For purposes of its Digital Library content, IS&T defines Open Access as papers that will be downloadable in their entirety for free in perpetuity. Copyright restrictions on papers vary; see individual paper for details.

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