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Evaluation of Different Polymerase Chain Reaction Methods for the Identification of Vibrio Parahaemolyticus Strains Isolated by Cultural Methods

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Control of contamination by Vibrio Parahaemolyticus in fishery products is often hampered by the lack of standardized methods and by the uncertainty associated with biochemical identification of the isolates. In this study, 5 polymerase chain reaction (PCR) methods for the identification of V. parahaemolyticus to the species level were evaluated by using 25 Vibrio reference strains and 163 isolates from fishery products, environmental sources, and clinical samples. Sequence targets of the methods were toxR, gyrB, and tlh genes (tested with 2 protocols), and the fragment pR72H. Isolate identification was confirmed by sequencing of the 16S rRNA gene and by PCR protocols for the identification of other Vibrio species. The PCR assay targeting the toxR gene achieved the highest performance (100 inclusivity and exclusivity). The 2 PCR protocols based on tlh gene detection, although showing the same inclusivity (100), differed in the exclusivity (50 and 91, respectively). Finally, the results provided by the PCR assays targeting the gyrB gene and pR72H fragment were less reliable and, in some cases, difficult to assess. According to the results of this study, the characteristics of accuracy expressed by the toxR identification method make it a suitable candidate as a reference method for the molecular identification of V. parahaemolyticus strains.
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Document Type: Research Article

Affiliations: 1: Istituto Superiore di Sanit, Centro Nazionale per la Qualit degli Alimenti e per i Rischi Alimentari, Reparto Adempimenti Comunitari e Sanit Pubblica, Viale Regina Elena 299, 00161 Rome, Italy. 2: Istituto Superiore di Sanit, Centro Nazionale per la Qualit degli Alimenti e per i Rischi Alimentari, Reparto Pericoli Microbiologici Connessi con gli Alimenti, Viale Regina Elena 299, 00161 Rome, Italy. 3: Universit di Roma La Sapienza, Dipartimento di Biologia Cellulare e dello Sviluppo, Via dei Sardi 70, 00185 Rome, Italy.

Publication date: November 1, 2007

More about this publication?
  • The Journal of AOAC INTERNATIONAL publishes refereed papers and reviews in the fields of chemical, biological and toxicological analytical chemistry for the purpose of showcasing the most precise, accurate and sensitive methods for analysis of foods, food additives, supplements and contaminants, cosmetics, drugs, toxins, hazardous substances, pesticides, feeds, fertilizers and the environment available at that point in time. The scope of the Journal includes unpublished original research describing new analytical methods, techniques and applications; improved approaches to sampling, both in the field and the laboratory; better methods of preparing samples for analysis; collaborative studies substantiating the performance of a given method; statistical techniques for evaluating data. The Journal will also publish other articles of general interest to its audience, e.g., technical communications; cautionary notes; comments on techniques, apparatus, and reagents.
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