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Comparison of in silico models for prediction of Daphnia magna acute toxicity

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Eight in silico modelling packages were evaluated and compared for the prediction of Daphnia magna acute toxicity from the viewpoint of the European legislation on chemicals, REACH. We tested the following models: Discovery Studio (DS) TOPKAT, ACD/Tox Suite, ADMET Predictor™, ECOSAR (Ecological Structure Activity Relationships), TerraQSAR™, T.E.S.T. (Toxicity Estimation Software Tool) and two models implemented in VEGA on 480 industrial compounds for 48-h median lethal concentrations (LC50) to D. magna, matching them with experimental values. The quality of the estimates was compared using a standard statistical review and an additional classification approach in which the hazard predictions were grouped using well-defined regulatory criteria. The regression parameters, correlation coefficient being the most influential, showed that four models (ADMET Predictor™, DS TOPKAT, TerraQSAR™ and VEGA DEMETRA) had similar reliability. These performed better than the others, but the coefficient of determination was still low (r 2 around 0.6), considering that at least half the predicted compounds were inside the training sets. Additionally, we grouped the results in four defined toxicity classes. TerraQSAR™ gave 60% of correct classifications, followed by DS TOPKAT, ADMET Predictor™ and VEGA DEMETRA, with 56%, 54% and 48%, respectively. These results highlight the challenges associated with developing reliable and easily applied acceptability criteria for the regulatory use of QSAR models to D. magna acute toxicity.
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Keywords: Daphnia magna; LC50; QSAR; aquatic acute toxicity; in silico models

Document Type: Research Article

Affiliations: 1: Laboratory of Chemistry and Environmental Toxicology, Istituto di Ricerche Farmacologiche Mario Negri – IRCCS, Via La Masa 19, 20156, Milano, Italy 2: Istituto Superiore di Sanità, ISS, Viale Regina Elena 299, 00161, Roma, Italy

Publication date: August 3, 2014

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