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Ecological perspectives on the sequenced genome collection

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Abstract

Our complete genome collection is one of our most valuable biological resources. A key challenge for the future is the interpretation of these genomes from an ecological perspective. In this review, we discuss current work at this increasingly important interface. In particular, we review ongoing work aimed at developing high quality data sets that combine ecological, environmental, evolutionary and genomic information. Such data will help to identify biases in the sequence collection and facilitate future discoveries about the nature of ecological adaptation at the genome level. These efforts will be greatly enhanced by the contributions of ecologists.
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Keywords: Bioinformatics; comparative method; extremophiles; genome architecture; genomics; host–parasite interactions; metadata; procaryotes; species interactions; viruses

Document Type: Research Article

Affiliations: Department of Ecology and Evolutionary Biology, Brown University, Providence, RI 02912, USA

Publication date: December 1, 2005

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