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The structure of the flexible arm of Thermotoga maritima tRNase Z differs from those of homologous enzymes

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tRNA 3′‐processing endoribonuclease (tRNase Z) is one of the enzymes involved in the 3′‐end processing of precursor tRNAs and is a member of the metallo‐β‐lactamase superfamily. tRNase Z crystal structures have revealed that the enzyme forms a dimer and has a characteristic domain, named a flexible arm or an exosite, which protrudes from the metallo‐β‐lactamase core and is involved in tRNA binding. The refined structure of Thermotoga maritima tRNase Z has been determined at 1.97 Å resolution, revealing the structure of the flexible arm and the zinc‐bound active site. The structure of the flexible arm of T. maritima tRNase Z is distinct from those of the Bacillus subtilis and Escherichia coli tRNase Zs. A comparison of the three tRNase Z structures revealed differences in the dimer orientation, which may be related to the unique cleavage‐site specificity of T. maritima tRNase Z.
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Keywords: 3′‐end maturation nuclease; Thermotoga maritima; metallo‐β‐lactamase; tRNA; tRNase Z

Document Type: Research Article

Publication date: August 1, 2007

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