Skip to main content
padlock icon - secure page this page is secure

SARAMAint: The Complementarity Plot for Protein–Protein Interface

Buy Article:

Your trusted access to this article has expired.

$105.00 + tax (Refund Policy)

Following our previous report of a graphical structural validation tool for single domain globular proteins namely the Complementarity Plot (SARAMA, available at http://www.saha.ac.in/biop/www/sarama.html), here we report the further development of the software (SARAMAint) for protein–protein interfaces available in the same webpage as a separate download link (http://www.saha.ac.in/biop/www/db/local/sarama/saramaint.tar.gz) to be effectively used not only to estimate the overall quality of a protein–protein complex but also to assess the individual quality of packing and electrostatics of residues embedded at the interface, in many cases arising due to coordinate errors, especially in low resolution structures. The plot could also be useful for the detailed residue-wise investigation of interfaces in realistic atomic models built for protein complexes in the absence of actual experimental data.
No Reference information available - sign in for access.
No Citation information available - sign in for access.
No Supplementary Data.
No Article Media
No Metrics

Keywords: COMPLEMENTARITY; PACKING AND ELECTROSTATICS; PROTEIN–PROTEIN INTERFACES

Document Type: Short Communication

Publication date: 01 December 2014

More about this publication?
  • Journal of Bioinformatics and Intelligent Control (JBIC) is an international journal that publishes research articles in areas of the bioinformatics and intelligent control. JBIC is aimed to provide an international forum for the exchange of ideas and new scientific and technological findings to disseminate information and promote the transfer of knowledge between professionals in academia and industry. The journal publishes original research papers; review papers; technical reports and notes; short communications focused on emerging new developments in these research areas.
  • Editorial Board
  • Information for Authors
  • Subscribe to this Title
  • Aims & Scope
  • Ingenta Connect is not responsible for the content or availability of external websites
  • Access Key
  • Free content
  • Partial Free content
  • New content
  • Open access content
  • Partial Open access content
  • Subscribed content
  • Partial Subscribed content
  • Free trial content
Cookie Policy
X
Cookie Policy
Ingenta Connect website makes use of cookies so as to keep track of data that you have filled in. I am Happy with this Find out more