Search Results

BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server

Authors: Geeleher, Paul; Morris, Dermot; Hinde, John P.; Golden, Aaron

Source: Bioinformatics, Volume 25, Number 11, 1 June 2009 , pp. 1438-1439(2)

Publisher: Oxford University Press

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x

Authors: Carey, Vincent J.; Davis, Adam R.; Lawrence, Michael F.; Gentleman, Robert; Raby, Benjamin A.

Source: Bioinformatics, Volume 25, Number 11, 1 June 2009 , pp. 1447-1448(2)

Publisher: Oxford University Press

KEGGgraph: a graph approach to KEGG PATHWAY in R and bioconductor

Authors: Zhang, Jitao David; Wiemann, Stefan

Source: Bioinformatics, Volume 25, Number 11, 1 June 2009 , pp. 1470-1471(2)

Publisher: Oxford University Press

PROMISE: a tool to identify genomic features with a specific biologically interesting pattern of associations with multiple endpoint variables

Authors: Pounds, Stan; Cheng, Cheng; Cao, Xueyuan; Crews, Kristine R.; Plunkett, William; Gandhi, Varsha; Rubnitz, Jeffrey; Ribeiro, Raul C.; Downing, James R.; Lamba, Jatinder

Source: Bioinformatics, Volume 25, Number 16, 15 August 2009 , pp. 2013-2019(7)

Publisher: Oxford University Press

Importing ArrayExpress datasets into RBioconductor

Authors: Kauffmann, Audrey; Rayner, Tim F.; Parkinson, Helen; Kapushesky, Misha; Lukk, Margus; Brazma, Alvis; Huber, Wolfgang

Source: Bioinformatics, Volume 25, Number 16, 15 August 2009 , pp. 2092-2094(3)

Publisher: Oxford University Press

The tspair package for finding top scoring pair classifiers in R

Author: Leek, Jeffrey T.

Source: Bioinformatics, Volume 25, Number 9, 1 May 2009 , pp. 1203-1204(2)

Publisher: Oxford University Press

Array-based genotyping in S.cerevisiae using semi-supervised clustering

Authors: Bourgon, Richard; Mancera, Eugenio; Brozzi, Alessandro; Steinmetz, Lars M.; Huber, Wolfgang

Source: Bioinformatics, Volume 25, Number 8, 15 April 2009 , pp. 1056-1062(7)

Publisher: Oxford University Press

Immunogenic males: a genome-wide analysis of reproduction and the cost of mating in Drosophila melanogaster females

Authors: INNOCENTI, P.; MORROW, E. H.

Source: Journal of Evolutionary Biology, Volume 22, Number 5, May 2009 , pp. 964-973(10)

Publisher: Blackwell Publishing

Bioconductor Case Studies by Florian Hahne, Wolfgang Huber, Robert Gentleman, Seth Falcon

Author: O'Brien, C.M.

Source: International Statistical Review, Volume 77, Number 1, April 2009 , pp. 158-159(2)

Publisher: Blackwell Publishing

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens

Authors: Rieber, Nora; Knapp, Bettina; Eils, Roland; Kaderali, Lars

Source: Bioinformatics, Volume 25, Number 5, 1 March 2009 , pp. 678-679(2)

Publisher: Oxford University Press

arrayQualityMetricsa bioconductor package for quality assessment of microarray data

Authors: Kauffmann, Audrey; Gentleman, Robert; Huber, Wolfgang

Source: Bioinformatics, Volume 25, Number 3, 1 February 2009 , pp. 415-416(2)

Publisher: Oxford University Press

rHVDM: an R package to predict the activity and targets of a transcription factor

Authors: Barenco, M.; Papouli, E.; Shah, S.; Brewer, D.; Miller, C.J.; Hubank, M.

Source: Bioinformatics, Volume 25, Number 3, 1 February 2009 , pp. 419-420(2)

Publisher: Oxford University Press

Testing significance relative to a fold-change threshold is a TREAT

Authors: McCarthy, Davis J.; Smyth, Gordon K.

Source: Bioinformatics, Volume 25, Number 6, 15 March 2009 , pp. 765-771(7)

Publisher: Oxford University Press

Power enhancement via multivariate outlier testing with gene expression arrays

Authors: Asare, Adam L.; Gao, Zhong; Carey, Vincent J.; Wang, Richard; Seyfert-Margolis, Vicki

Source: Bioinformatics, Volume 25, Number 1, 1 January 2009 , pp. 48-53(6)

Publisher: Oxford University Press

Using Free and Open-Source Bioconductor Packages to Analyze Array Comparative Genomics Hybridization (aCGH) Data

Authors: Lin, Simon; Du, Pan; Jafari, Nadereh; Ouchi, Toru

Source: Current Genomics, Volume 10, Number 1, March 2009 , pp. 60-63(4)

Publisher: Bentham Science Publishers

Identifying differentially expressed subnetworks with MMG

Authors: Noirel, Josselin; Sanguinetti, Guido; Wright, Phillip C.

Source: Bioinformatics, Volume 24, Number 23, 1 December 2008 , pp. 2792-2793(2)

Publisher: Oxford University Press

GEOmetadb: powerful alternative search engine for the Gene Expression Omnibus

Authors: Zhu, Yuelin; Davis, Sean; Stephens, Robert; Meltzer, Paul S.; Chen, Yidong

Source: Bioinformatics, Volume 24, Number 23, 1 December 2008 , pp. 2798-2800(3)

Publisher: Oxford University Press

BASH: a tool for managing BeadArray spatial artefacts

Authors: Cairns, J. M.; Dunning, M. J.; Ritchie, M. E.; Russell, R.; Lynch, A. G.

Source: Bioinformatics, Volume 24, Number 24, 15 December 2008 , pp. 2921-2922(2)

Publisher: Oxford University Press

Analyzing gene perturbation screens with nested effects models in R and bioconductor

Authors: Fröhlich, Holger; Beißbarth, Tim; Tresch, Achim; Kostka, Dennis; Jacob, Juby; Spang, Rainer; Markowetz, F.

Source: Bioinformatics, Volume 24, Number 21, 1 November 2008 , pp. 2549-2550(2)

Publisher: Oxford University Press

A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays

Authors: Lee, Chia-Ju; Fu, Dong; Du, Pan; Jiang, Hongmei; Lin, Simon M.; Kibbe, Warren

Source: International Journal of Computational Biology and Drug Design, Volume 1, Number 4, 22 December 2008 , pp. 396-405(10)

Publisher: Inderscience Publishers