Search Results

TileProbe: modeling tiling array probe effects using publicly available data

Authors: Judy, Jennifer Toolan; Ji, Hongkai

Source: Bioinformatics, Volume 25, Number 18, 15 September 2009 , pp. 2369-2375(7)

Publisher: Oxford University Press

A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level

Authors: Zheng, Sika; Chen, Liang

Source: Nucleic Acids Research, Volume 37, Number 10, 20 June 2009 , pp. e75-e75(1)

Publisher: Oxford University Press

The transcriptionally active regions in the genome of Bacillus subtilis

Authors: Rasmussen, Simon; Nielsen, Henrik Bjørn; Jarmer, Hanne

Source: Molecular Microbiology, Volume 73, Number 6, September 2009 , pp. 1043-1057(15)

Publisher: Blackwell Publishing

Stress-induced changes in the Arabidopsis thaliana transcriptome analyzed using whole-genome tiling arrays

Authors: Zeller, Georg; Henz, Stefan R.; Widmer, Christian K.; Sachsenberg, Timo; Rätsch, Gunnar; Weigel, Detlef; Laubinger, Sascha

Source: The Plant Journal, Volume 58, Number 6, June 2009 , pp. 1068-1082(15)

Publisher: Blackwell Publishing

Arabidopsis RNA immunoprecipitation

Authors: Terzi, Lionel C.; Simpson, Gordon G

Source: The Plant Journal, Volume 59, Number 1, July 2009 , pp. 163-168(6)

Publisher: Blackwell Publishing

Gene copy number variations in Asian patients with congenital bilateral absence of the vas deferens

Authors: Lee, Chia-Huei; Wu, Chien-Chih; Wu, Yi-No; Chiang, Han-Sun

Source: Human Reproduction, Volume 24, Number 3, 4 March 2009 , pp. 748-755(8)

Publisher: Oxford University Press

CoCAS: a ChIP-on-chip analysis suite

Authors: Benoukraf, Touati; Cauchy, Pierre; Fenouil, Romain; Jeanniard, Adrien; Koch, Frederic; Jaeger, Sébastien; Thieffry, Denis; Imbert, Jean; Andrau, Jean-Christophe; Spicuglia, Salvatore; Ferrier, Pierre

Source: Bioinformatics, Volume 25, Number 7, 1 April 2009 , pp. 954-955(2)

Publisher: Oxford University Press

Identification of a heterozygous genomic deletion in the spatacsin gene in SPG11 patients using high-resolution comparative genomic hybridization

Authors: Bauer, Peter; Winner, Beate; Schüle, Rebecca; Bauer, Claudia; Häfele, Veronika; Hehr, Ute; Bonin, Michael; Walter, Michael; Karle, Kathrin; Ringer, Thomas; Rieß, Olaf; Winkler, Jürgen; Schöls, Ludger

Source: Neurogenetics, Volume 10, Number 1, February 2009 , pp. 43-48(6)

Publisher: Springer

Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes

Authors: Naouar, Naïra; Vandepoele, Klaas; Lammens, Tim; Casneuf, Tineke; Zeller, Georg; van Hummelen, Paul; Weigel, Detlef; Rätsch, Gunnar; Inzé, Dirk; Kuiper, Martin; De Veylder, Lieven; Vuylsteke, Marnik

Source: The Plant Journal, Volume 57, Number 1, January 2009 , pp. 184-194(11)

Publisher: Blackwell Publishing

Poisson approximation for significance in genome-wide ChIP-chip tiling arrays

Author: Zhang, Yu

Source: Bioinformatics, Volume 24, Number 24, 15 December 2008 , pp. 2825-2831(7)

Publisher: Oxford University Press

An epigenetic aberration increased in intergenic regions of cloned mice

Authors: Nishida, Hiromi; Kondo, Shinji; Suzuki, Takahiro; Tsujimura, Yuki; Komatsu, Shunsuke; Wakayama, Teruhiko; Hayashizaki, Yoshihide

Source: Mammalian Genome, Volume 19, Numbers 10-12, December 2008 , pp. 667-674(8)

Publisher: Springer

Modulated multipolar structures in magnetic arrays

Authors: Vedmedenko, E. Y.; Wiesendanger, R.

Source: Philosophical Magazine, Volume 88, Numbers 18-20, June 2008 , pp. 2683-2697(15)

Publisher: Taylor and Francis Ltd

In search of multipolar order on the Penrose tiling

Authors: Vedmedenko, E. Y.; Mandel, S. Even-Dar; Lifshitz, R.

Source: Philosophical Magazine, Volume 88, Numbers 13-15, May 2008 , pp. 2197-2207(11)

Publisher: Taylor and Francis Ltd

A Flexible and Powerful Bayesian Hierarchical Model for ChIP-Chip Experiments

Authors: Gottardo, Raphael; Li, Wei; Johnson, W. Evan; Liu, X. Shirley

Source: Biometrics, Volume 64, Number 2, June 2008 , pp. 468-478(11)

Publisher: Blackwell Publishing

Long, abundantly expressed non-coding transcripts are altered in cancer

Authors: Perez, Damon S.; Hoage, Tiffany R.; Pritchett, Jay R.; Ducharme-Smith, Allison L.; Halling, Meredith L.; Ganapathiraju, Sree C.; Streng, Paul S.; Smith, David I.

Source: Human Molecular Genetics, Volume 17, Number 5, 1 March 2008 , pp. 642-655(14)

Publisher: Oxford University Press

Comparative genome hybridization suggests a role for NRXN1 and APBA2 in schizophrenia

Authors: Kirov, George; Gumus, Dilihan; Chen, Wei; Norton, Nadine; Georgieva, Lyudmila; Sari, Murat; ODonovan, Michael C; Erdogan, Fikret; Owen, Michael J; Ropers, Hans-Hilger; Ullmann, Reinhard

Source: Human Molecular Genetics, Volume 17, Number 3, 1 February 2008 , pp. 458-465(8)

Publisher: Oxford University Press

Integrating quantitative information from ChIP-chip experiments into motif finding

Authors: Shim, Heejung; Kele, Sndz

Source: Biostatistics, Volume 9, Number 1, 11 January 2008 , pp. 51-65(15)

Publisher: Oxford University Press

Utilizing tiling microarrays for whole-genome analysis in plants

Authors: Gregory, Brian D.; Yazaki, Junshi; Ecker, Joseph R.

Source: The Plant Journal, Volume 53, Number 4, February 2008 , pp. 636-644(9)

Publisher: Blackwell Publishing

Transcription factor binding site identification in yeast: a comparison of high-density oligonucleotide and PCR-based microarray platforms

Authors: Borneman, Anthony; Zhang, Zhengdong; Rozowsky, Joel; Seringhaus, Michael; Gerstein, Mark; Snyder, Michael

Source: Functional & Integrative Genomics, Volume 7, Number 4, October 2007 , pp. 335-345(11)

Publisher: Springer

ChIP-chip: Data, Model, and Analysis

Authors: Zheng, Ming; Barrera, Leah O.; Ren, Bing; Wu, Ying Nian

Source: Biometrics, Volume 63, Number 3, September 2007 , pp. 787-796(10)

Publisher: Blackwell Publishing