Search Results

Antimony: a modular model definition language

Authors: Smith, Lucian P.; Bergmann, Frank T.; Chandran, Deepak; Sauro, Herbert M.

Source: Bioinformatics, Volume 25, Number 18, 15 September 2009 , pp. 2452-2454(3)

Publisher: Oxford University Press

libAnnotationSBML: a library for exploiting SBML annotations

Authors: Swainston, Neil; Mendes, Pedro

Source: Bioinformatics, Volume 25, Number 17, 1 September 2009 , pp. 2292-2293(2)

Publisher: Oxford University Press

GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models

Author: Bois, Frdric Y.

Source: Bioinformatics, Volume 25, Number 11, 1 June 2009 , pp. 1453-1454(2)

Publisher: Oxford University Press

SBML2L^aT_EX: Conversion of SBML files into human-readable reports

Authors: Drger, Andreas; Planatscher, Hannes; Motsou Wouamba, Dieudonn; Schrder, Adrian; Hucka, Michael; Endler, Lukas; Golebiewski, Martin; Mller, Wolfgang; Zell, Andreas

Source: Bioinformatics, Volume 25, Number 11, 1 June 2009 , pp. 1455-1456(2)

Publisher: Oxford University Press

LibSBML: an API Library for SBML

Authors: Bornstein, Benjamin J.; Keating, Sarah M.; Jouraku, Akiya; Hucka, Michael

Source: Bioinformatics, Volume 24, Number 6, 15 March 2008 , pp. 880-881(2)

Publisher: Oxford University Press

Synthetic microarray data generation with RANGE and NEMO

Authors: Long, James; Roth, Mitchell

Source: Bioinformatics, Volume 24, Number 1, 1 January 2008 , pp. 132-134(3)

Publisher: Oxford University Press

Computational Tools for Modeling Protein Networks

Authors: Bergmann, Frank T.; Vallabhajosyula, Ravishankar R.; Sauro, Herbert M.

Source: Current Proteomics, Volume 3, Number 3, October 2006 , pp. 181-197(17)

Publisher: Bentham Science Publishers

MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data

Authors: Bunk, Boyke; Kucklick, Martin; Jonas, Rochus; Münch, Richard; Schobert, Max; Jahn, Dieter; Hiller, Karsten

Source: Bioinformatics, Volume 22, Number 23, 1 December 2006 , pp. 2962-2965(4)

Publisher: Oxford University Press

SBML-PET: a Systems Biology Markup Language-based parameter estimation tool

Authors: Zi, Zhike; Klipp, Edda

Source: Bioinformatics, Volume 22, Number 21, 1 November 2006 , pp. 2704-2705(2)

Publisher: Oxford University Press

Bioinformatic Standards for Proteomics-Oriented Mass Spectrometry

Authors: Droit, Arnaud; Fillon, Joel; Morissette, Jean; Poirier, Guy G.

Source: Current Proteomics, Volume 3, Number 2, July 2006 , pp. 119-128(10)

Publisher: Bentham Science Publishers

The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks

Authors: Machné, Rainer; Finney, Andrew; Müller, Stefan; Lu, James; Widder, Stefanie; Flamm, Christoph

Source: Bioinformatics, Volume 22, Number 11, 1 June 2006 , pp. 1406-1407(2)

Publisher: Oxford University Press

Principles and Practices of Pathway Modelling

Authors: Raman, Karthik; Rajagopalan, Preethi; Chandra, Nagasuma

Source: Current Bioinformatics, Volume 1, Number 2, May 2006 , pp. 147-160(14)

Publisher: Bentham Science Publishers

SBMLToolbox: an SBML toolbox for MATLAB users

Authors: Keating, Sarah M.; Bornstein, Benjamin J.; Finney, Andrew; Hucka, Michael

Source: Bioinformatics, Volume 22, Number 10, 15 May 2006 , pp. 1275-1277(3)

Publisher: Oxford University Press

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology

Authors: Schmidt, Henning; Jirstrand, Mats

Source: Bioinformatics, Volume 22, Number 4, 15 February 2006 , pp. 514-515(2)

Publisher: Oxford University Press

MathSBML: a package for manipulating SBML-based biological models

Authors: Shapiro, Bruce E.; Hucka, Michael; Finney, Andrew; Doyle, John

Source: Bioinformatics, Volume 20, Number 16, 1 November 2004 , pp. 2829-2831(3)

Publisher: Oxford University Press

Original Paper
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Authors: Cornish-Bowden A.; Hunter P.J.; Cuellar A.A.; Mjolsness E.D.; Juty N.S.; Dronov S.; Takahashi K.; Nakayama Y.; Gilles E.D.; Kasberger J.L.; Nelson M.R.; Tomita M.; Kremling A.; Ginkel M.; Wagner J.; Kummer U.; Nielsen P.F.; Gor V.; Wang J.; Sakurada T.; Goryanin I.I.; Le Novère N.; Schaff J.C.; Loew L.M.; Hedley W.J.; Lucio D.; Hodgman T.C.; Shapiro B.E.; Mendes P.; Hofmeyr J.-H.; Shimizu T.S.; Minch E.; Spence H.D.; Stelling J.; Hucka M.; Finney A.; Sauro H.M.; Bolouri H.; Doyle J.C.; Kitano H.; Arkin A.P.; Bornstein B.J.; Bray D.

Source: Bioinformatics, Volume 19, Number 4, 1 March 2003 , pp. 524-531(8)

Publisher: Oxford University Press

The complexity of comparing reaction systems

Source: Bioinformatics, Volume 18, Number 3, March 2002 , pp. 465-469(5)

Publisher: Oxford University Press