Search Results

Preferential counterion binding to A-tract DNA oligomers

Authors: Stellwagen N.C.; Magnusdottir S.; Gelfi C.; Righetti P.G.

Source: Journal of Molecular Biology, Volume 305, Number 5, 2 February 2001 , pp. 1025-1033(9)

Publisher: Elsevier

Molecular Dynamics Simulations of B -DNA: Sequence Effects on A-tract-induced Bending and Flexibility

Authors: McConnell K.J.; Beveridge D.L.

Source: Journal of Molecular Biology, Volume 314, Number 1, November 2001 , pp. 23-40(18)

Publisher: Academic Press

Intrinsic Bending and Deformability at the T-A Step of CCTTTAAAGG: A Comparative Analysis of T-A and A-T Steps within A-tracts

Authors: Mack D.R.; Chiu T.K.; Dickerson R.E.

Source: Journal of Molecular Biology, Volume 312, Number 5, October 2001 , pp. 1037-1049(13)

Publisher: Academic Press

A-Tract Bending: Insights into Experimental Structures by Computational Models

Authors: Strahs D.; Schlick T.

Source: Journal of Molecular Biology, Volume 301, Number 3, August 2000 , pp. 643-663(21)

Publisher: Academic Press

Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending

Authors: Hud N.V.; Sklenar V.; Feigon J.

Source: Journal of Molecular Biology, Volume 286, Number 3, 26 February 1999 , pp. 651-660(10)

Publisher: Elsevier

Molecular dynamics studies of axis bending in d(G₅-(GA₄T₄C)₂-C₅) and d(G₅-(GT₄A₄C)₂-C₅): effects of sequence polarity on DNA curvature

Authors: Sprous D.; Young M.A.; Beveridge D.L.

Source: Journal of Molecular Biology, Volume 285, Number 4, 29 January 1999 , pp. 1623-1632(10)

Publisher: Elsevier

Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing

Authors: Minasov G.; Tereshko V.; Egli M.

Source: Journal of Molecular Biology, Volume 291, Number 1, 6 September 1999 , pp. 83-99(17)

Publisher: Elsevier

Designed hyperstable lac Repressor.DNA loop topologies suggest alternative loop geometries

Authors: Mehta R.A.; Kahn J.D.

Source: Journal of Molecular Biology, Volume 294, Number 1, 19 November 1999 , pp. 67-77(11)

Publisher: Elsevier

DNA bending and sequence-dependent backbone conformation NMR and computer experiments

Authors: Ojha, R.P.; Dhingra, M.M.; Sarma, M.H.; Shibata, M.; Farrar, M.; Turner, C.J.; Sarma, R.H.

Source: FEBS Journal, Volume 265, Number 1, 1 October 1999 , pp. 35-53(19)

Publisher: Blackwell Publishing

Localization of Ammonium Ions in the Minor Groove of DNA Duplexes in Solution and the Origin of DNA A-Tract Bending

Authors: Hud N.V.; Sklená V.; Feigon J.

Source: Journal of Molecular Biology, Volume 286, Number 3, February 1999 , pp. 651-660(10)

Publisher: Academic Press

TATA Box DNA Deformation with and without the TATA Box-binding Protein

Authors: Davis N.A.; Majee S.S.; Kahn J.D.

Source: Journal of Molecular Biology, Volume 291, Number 2, August 1999 , pp. 249-265(17)

Publisher: Academic Press

CTG repeats associated with human genetic disease are inherently flexible

Authors: Chastain P.D.; Sinden R.R.

Source: Journal of Molecular Biology, Volume 275, Number 3, 23 January 1998 , pp. 405-411(7)

Publisher: Elsevier

Polymer chain statistics and conformational analysis of DNA molecules with bends or sections of different flexibility

Authors: Rivetti C.; Walker C.; Bustamante C.

Source: Journal of Molecular Biology, Volume 280, Number 1, 3 July 1998 , pp. 41-59(19)

Publisher: Elsevier

Molecular dynamics simulations of an oligonucleotide duplex with adenine tracts phased by a full helix turn

Authors: Young M.A.; Beveridge D.L.

Source: Journal of Molecular Biology, Volume 281, Number 4, 28 August 1998 , pp. 675-687(13)

Publisher: Elsevier

Crystal structure of the MATa1/MAT2 homeodomain heterodimer in complex with DNA containing an A-tract

Authors: Li, Thomas; Jin, Yisheng; Vershon, Andrew K.; Wolberger, Cynthia

Source: Nucleic Acids Research, Volume 26, Number 24, 15 December 1998 , pp. 5707-5718(12)

Publisher: Oxford University Press

Polymer Chain Statistics and Conformational Analysis of DNA Molecules with Bends or Sections of Different Flexibility

Authors: Rivetti C.; Walker C.; Bustamante C.

Source: Journal of Molecular Biology, Volume 280, Number 1, July 1998 , pp. 41-59(19)

Publisher: Academic Press

Molecular Dynamics Simulations of an Oligonucleotide Duplex with Adenine Tracts Phased by a Full Helix Turn

Authors: Young M.A.; Beveridge D.L.

Source: Journal of Molecular Biology, Volume 281, Number 4, August 1998 , pp. 675-687(13)

Publisher: Academic Press

X-ray and solution studies of DNA oligomers and implications for the structural basis of A-tract-dependent curvature

Authors: Shatzky-Schwartz M.; Arbuckle N.D.; Eisenstein M.; Rabinovich D.; Bareket-Samish A.; Haran T.E.; Luisi B.F.; Shakked Z.

Source: Journal of Molecular Biology, Volume 267, Number 3, 4 April 1997 , pp. 595-623(29)

Publisher: Elsevier

Structure of a DNA analog of the primer for HIV-1 RT second strand synthesis

Authors: Han G.W.; Kopka M.L.; Cascio D.; Grzeskowiak K.; Dickerson R.E.

Source: Journal of Molecular Biology, Volume 269, Number 5, 27 July 1997 , pp. 811-826(16)

Publisher: Elsevier

X-ray and Solution Studies of DNA Oligomers and Implications for the Structural Basis of A-tract-dependent Curvature

Authors: Shatzky-Schwartz M.; Arbuckle N.D.; Eisenstein M.; Rabinovich D.; Bareket-Samish A.; Haran T.E.; Luisi B.F.; Shakked Z.

Source: Journal of Molecular Biology, Volume 267, Number 3, April 1997 , pp. 595-623(29)

Publisher: Academic Press