Systematic Biology

Penalized Likelihood Phylogenetic Inference: Bridging the Parsimony-Likelihood Gap
pp. 665-674(10)
Authors: Kim, Junhyong; Sanderson, Michael

A Model-Based Approach to Study Nearest-Neighbor Influences Reveals Complex Substitution Patterns in Non-coding Sequences
pp. 675-692(18)
Authors: Baele, Guy; Van de Peer, Yves; Vansteelandt, Stijn

A Comparative Study in Ancestral Range Reconstruction Methods: Retracing the Uncertain Histories of Insular Lineages
pp. 693-707(15)
Authors: Clark, John; Ree, Richard; Alfaro, Michael; King, Matthew; Wagner, Warren; Roalson, Eric

Statistical Tests between Competing Hypotheses of Hox Cluster Evolution
pp. 708-718(11)
Authors: Lanfear, Robert; Bromham, Lindell

Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data
pp. 719-731(13)
Authors: Brumfield, Robb; Liu, Liang; Lum, David; Edwards, Scott

Multiple Colonizations, In Situ Speciation, and Volcanism-Associated Stepping-Stone Dispersals Shaped the Phylogeography of the Macaronesian Red Fescues (Festuca L., Gramineae)
pp. 732-749(18)
Authors: Diaz-Perez, Antonio; Sequeira, Miguel; Santos-Guerra, Arnoldo; Catalan, Pilar

Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
pp. 750-757(8)
Authors: Munch, Kasper; Boomsma, Wouter; Huelsenbeck, John; Willerslev, Eske; Nielsen, Rasmus

A Rapid Bootstrap Algorithm for the RAxML Web Servers
pp. 758-771(14)
Authors: Stamatakis, Alexandros; Hoover, Paul; Rougemont, Jacques

Wagner and Dollo: A Stochastic Duet by Composing Two Parsimonious Solos
pp. 772-784(13)
Authors: Alekseyenko, Alexander; Lee, Christopher; Suchard, Marc

Trees of Trees: An Approach to Comparing Multiple Alternative Phylogenies
pp. 785-794(10)
Author: Nye, Tom

Rooting and Dating Maples (Acer) with an Uncorrelated-Rates Molecular Clock: Implications for North American/Asian Disjunctions
pp. 795-808(14)
Authors: Renner, Susanne; Grimm, Guido; Schneeweiss, Gerald; Stuessy, Tod; Ricklefs, Robert

The Use of Mean Instead of Smallest Interspecific Distances Exaggerates the Size of the “Barcoding Gap” and Leads to Misidentification
pp. 809-813(5)
Authors: Meier, Rudolf; Zhang, Guanyang; Ali, Farhan

A Justification for Reporting the Majority-Rule Consensus Tree in Bayesian Phylogenetics
pp. 814-821(8)
Authors: Holder, Mark; Sukumaran, Jeet; Lewis, Paul

A review of “The Cambridge Companion to the Philosophy of Biology”
pp. 822-823(2)
Author: Morrison, David