Systematic Biology

Guided Tree Topology Proposals for Bayesian Phylogenetic Inference
pp. 1-11(11)
Authors: Hhna, Sebastian; Drummond, Alexei J.

Generalized Mixture Models for Molecular Phylogenetic Estimation
pp. 12-21(10)
Authors: Evans, Jason; Sullivan, Jack

Evaluating Fossil Calibrations for Dating Phylogenies in Light of Rates of Molecular Evolution: A Comparison of Three Approaches
pp. 22-43(22)
Authors: Lukoschek, Vimoksalehi; Scott Keogh, J.; Avise, John C.

Phylogeny Estimation of the Radiation of Western North American Chipmunks (Tamias) in the Face of Introgression Using Reproductive Protein Genes
pp. 44-62(19)
Authors: Reid, Noah; Demboski, John R.; Sullivan, Jack

Phylogenetic and Coalescent Strategies of Species Delimitation in Snubnose Darters (Percidae: Etheostoma)
pp. 63-79(17)
Authors: Harrington, Richard C.; Near, Thomas J.

Taxonomic Structure of the Fossil Record is Shaped by Sampling Bias
pp. 80-89(10)
Authors: Lloyd, Graeme T.; Young, Jeremy R.; Smith, Andrew B.

SAT-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees
pp. 90-106(17)
Authors: Liu, Kevin; Warnow, Tandy J.; Holder, Mark T.; Nelesen, Serita M.; Yu, Jiaye; Stamatakis, Alexandros P.; Linder, C. Randal

Inferring Species Networks from Gene Trees in High-Polyploid North American and Hawaiian Violets (Viola, Violaceae)
pp. 107-126(20)
Authors: Marcussen, Thomas; Jakobsen, Kjetill S.; Danihelka, Ji; Ballard, Harvey E.; Blaxland, Kim; Brysting, Anne K.; Oxelman, Bengt

Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities
pp. 127-137(11)
Authors: Moalic, Yann; Desbruyres, Daniel; Duarte, Carlos M.; Rozenfeld, Alejandro F.; Bachraty, Charleyne; Arnaud-Haond, Sophie

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation
pp. 138-149(12)
Authors: Heled, Joseph; Drummond, Alexei J.

Phylogenomic Analysis Resolves the Interordinal Relationships and Rapid Diversification of the Laurasiatherian Mammals
pp. 150-164(15)
Authors: Zhou, Xuming; Xu, Shixia; Xu, Junxiao; Chen, Bingyao; Zhou, Kaiya; Yang, Guang

Determining Species Boundaries in a World Full of Rarity: Singletons, Species Delimitation Methods
pp. 165-169(5)
Authors: Lim, Gwynne S.; Balke, Michael; Meier, Rudolf

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
pp. 170-173(4)
Authors: Ayres, Daniel L.; Darling, Aaron; Zwickl, Derrick J.; Beerli, Peter; Holder, Mark T.; Lewis, Paul O.; Huelsenbeck, John P.; Ronquist, Fredrik; Swofford, David L.; Cummings, Michael P.; Rambaut, Andrew; Suchard, Marc A.

Phylogenetic Networks: Concepts, Algorithms and Applications
pp. 174-175(2)
Author: Kelk, Steven

Phylogenetic Networks: Concepts, Algorithms and Applications
pp. 176-177(2)
Author: Whitfield, James B.

Corrigendum
pp. 178-178(1)