Nucleic Acids Research

Nucleic Acids Research
pp. i-i(1)

Nucleic Acids Research
pp. ii-ii(1)

Subscriptions
pp. iii-iii(1)

A novel procedure for genotyping of single nucleotide polymorphisms in trisomy with genomic DNA and the invader assay
pp. e145-e145(1)
Authors: Duffy, Kelly J.; Littrell, Jack; Locke, Adam; Sherman, Stephanie L.; Olivier, Michael

Identification and recovery of minor HIV-1 variants using the heteroduplex tracking assay and biotinylated probes
pp. e146-e146(1)
Authors: Schnell, Gretja; Ince, William L.; Swanstrom, Ronald

Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes
pp. e147-e147(1)
Authors: Suzuki, Haruo; Sota, Masahiro; Brown, Celeste J.; Top, Eva M.

Bacteriophage Mu integration in yeast and mammalian genomes
pp. e148-e148(1)
Authors: Paatero, Anja O.; Turakainen, Hilkka; Happonen, Lotta J.; Olsson, Cia; Palomäki, Tiina; Pajunen, Maria I.; Meng, Xiaojuan; Otonkoski, Timo; Tuuri, Timo; Berry, Charles; Malani, Nirav; Frilander, Mikko J.; Bushman, Frederic D.; Savilahti, Harri

Rolling circle amplification-mediated hairpin RNA (RMHR) library construction in plants
pp. e149-e149(1)
Authors: Wang, Lei; Luo, Yan-Zhong; Zhang, Lan; Jiao, Xiao-Ming; Wang, Ming-Bo; Fan, Yun-Liu

Errors in the bisulfite conversion of DNA: modulating inappropriate- and failed-conversion frequencies
pp. e150-e150(1)
Authors: Genereux, Diane P.; Johnson, Winslow C.; Burden, Alice F.; Stöger, Reinhard; Laird, Charles D.

A novel method to generate unmarked gene deletions in the intracellular pathogen Rhodococcus equi using 5-fluorocytosine conditional lethality
pp. e151-e151(1)
Authors: van der Geize, R.; de Jong, W.; Hessels, G. I.; Grommen, A. W. F.; Jacobs, A. A. C.; Dijkhuizen, L.

Editorial
pp. 6945-6947(3)

A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii
pp. 6948-6958(11)
Authors: Li, Enhu; Reich, Claudia I.; Olsen, Gary J.

Proteome-wide identification of poly(ADP-ribose) binding proteins and poly(ADP-ribose)-associated protein complexes
pp. 6959-6976(18)
Authors: Gagné, Jean-Philippe; Isabelle, Maxim; Lo, Ken Sin; Bourassa, Sylvie; Hendzel, Michael J.; Dawson, Valina L.; Dawson, Ted M.; Poirier, Guy G.

Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis
pp. 6977-6987(11)
Authors: Schöning, Jan C.; Streitner, Corinna; Meyer, Irmtraud M.; Gao, Yahong; Staiger, Dorothee

Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases
pp. 6988-6998(11)
Authors: Nomura, Norimichi; Nomura, Yayoi; Sussman, Django; Klein, Daniel; Stoddard, Barry L.

Properties of pseudo-complementary DNA substituted with weakly pairing analogs of guanine or cytosine
pp. 6999-7008(10)
Authors: Lahoud, Georges; Timoshchuk, Victor; Lebedev, Alexandre; Arar, Khalil; Hou, Ya-Ming; Gamper, Howard

Derivatization of DNAs with selenium at 6-position of guanine for function and crystal structure studies
pp. 7009-7018(10)
Authors: Salon, Jozef; Jiang, Jiansheng; Sheng, Jia; Gerlits, Oksana O.; Huang, Zhen

Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements
pp. 7019-7028(10)
Authors: Kyrchanova, Olga; Chetverina, Darya; Maksimenko, Oksana; Kullyev, Andrey; Georgiev, Pavel

RecG interacts directly with SSB: implications for stalled replication fork regression
pp. 7029-7042(14)
Authors: Buss, Jackson A.; Kimura, Yuji; Bianco, Piero R.

In vitro initial attachment of HIV-1 integrase to viral ends: control of the DNA specific interaction by the oligomerization state
pp. 7043-7058(16)
Authors: Lesbats, P.; Métifiot, M.; Calmels, C.; Baranova, S.; Nevinsky, G.; Andreola, M. L.; Parissi, V.

Reinitiated viral RNA-dependent RNA polymerase resumes replication at a reduced rate
pp. 7059-7067(9)
Authors: Vilfan, Igor D.; Candelli, Andrea; Hage, Susanne; Aalto, Antti P.; Poranen, Minna M.; Bamford, Dennis H.; Dekker, Nynke H.

A NMR strategy to unambiguously distinguish nucleic acid hairpin and duplex conformations applied to a Xist RNA A-repeat
pp. 7068-7077(10)
Authors: Duszczyk, Malgorzata M.; Zanier, Katia; Sattler, Michael

Common physical basis of macromolecule-binding sites in proteins
pp. 7078-7087(10)
Authors: Chen, Yao Chi; Lim, Carmay

A rugged free energy landscape separates multiple functional RNA folds throughout denaturation
pp. 7088-7099(12)
Authors: Ditzler, Mark A.; Rueda, David; Mo, Jingjie; Håkansson, Kristina; Walter, Nils G.

Thermodynamic stability and Watson-Crick base pairing in the seed duplex are major determinants of the efficiency of the siRNA-based off-target effect
pp. 7100-7109(10)
Authors: Ui-Tei, Kumiko; Naito, Yuki; Nishi, Kenji; Juni, Aya; Saigo, Kaoru

Structural and functional characterization of the LldR from Corynebacterium glutamicum: a transcriptional repressor involved in l-lactate and sugar utilization
pp. 7110-7123(14)
Authors: Gao, Yong-Gui; Suzuki, Hiroaki; Itou, Hiroshi; Zhou, Yong; Tanaka, Yoshikazu; Wachi, Masaaki; Watanabe, Nobuhisa; Tanaka, Isao; Yao, Min

Novel bimodular DNA aptamers with guanosine quadruplexes inhibit phylogenetically diverse HIV-1 reverse transcriptases
pp. 7124-7135(12)
Authors: Michalowski, Daniel; Chitima-Matsiga, Rebecca; Held, Daniel M.; Burke, Donald H.

Efficient processing of TFO-directed psoralen DNA interstrand crosslinks by the UvrABC nuclease
pp. 7136-7145(10)
Authors: Christensen, Laura A.; Wang, Hong; Van Houten, Bennett; Vasquez, Karen M.

Exploring TAR-RNA aptamer loop-loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance
pp. 7146-7156(11)
Authors: Lebars, Isabelle; Legrand, Pierre; Aimé, Ahissan; Pinaud, Noël; Fribourg, Sébastien; Di Primo, Carmelo

A cytoplasmic variant of the KH-type splicing regulatory protein serves as a decay-promoting factor for phosphoglycerate kinase 2 mRNA in murine male germ cells
pp. 7157-7167(11)
Authors: Xu, Mingang; McCarrey, John R.; Hecht, Norman B.

Induction of PPM1D following DNA-damaging treatments through a conserved p53 response element coincides with a shift in the use of transcription initiation sites
pp. 7168-7180(13)
Authors: Rossi, Matteo; Demidov, Oleg N.; Anderson, Carl W.; Appella, Ettore; Mazur, Sharlyn J.

Synapsis and catalysis by activated Tn3 resolvase mutants
pp. 7181-7191(11)
Authors: Olorunniji, Femi J.; He, Jiuya; Wenwieser, Sandra V.C.T.; Boocock, Martin R.; Stark, W. Marshall

Functional characterization of alternatively spliced human SECISBP2 transcript variants
pp. 7192-7206(15)
Authors: Papp, Laura V.; Wang, Junning; Kennedy, Derek; Boucher, Didier; Zhang, Yan; Gladyshev, Vadim N.; Singh, Ravindra N.; Khanna, Kum Kum

Highly individual methylation patterns of alternative glucocorticoid receptor promoters suggest individualized epigenetic regulatory mechanisms
pp. 7207-7218(12)
Authors: Turner, Jonathan D.; Pelascini, Laetitia P. L.; Macedo, Joana A.; Muller, Claude P.

A diversity of uncharacterized reverse transcriptases in bacteria
pp. 7219-7229(11)
Authors: Simon, Dawn M.; Zimmerly, Steven

Depurination within the intergenic region of Brome mosaic virus RNA3 inhibits viral replication in vitro and in vivo
pp. 7230-7239(10)
Authors: Karran, Rajita A.; Hudak, Katalin A.

Small non-coding RNAs in Streptomyces coelicolor
pp. 7240-7251(12)
Authors: Swiercz, Julia P.; Hindra,; Bobek, Jan; Haiser, Henry J.; Di Berardo, Christina; Tjaden, Brian; Elliot, Marie A.