Nucleic Acids Research

Article
Bypassing antibiotic selection: positive screening of genetically modified cells with an antigen-dependent proliferation switch
pp. e32-e32(1)
Authors: Kawahara M.; Ueda H.; Morita S.; Tsumoto K.; Kumagai I.; Nagamune T.

Article
Amplification of repeat-containing transcribed sequences (ARTS): a transcriptome fingerprinting strategy to detect functionally relevant microsatellite mutations in cancer
pp. e33-e33(1)
Authors: Calogero R.; Medico E.; Olivero M.; Ruggiero T.; Coltella N.; Maffe’ A.; Di Renzo M.F.

Article
Internal ³²P-labeling of l-deoxyoligonucleotides
pp. e34-e34(1)
Authors: Frauendorf C.; Hausch F.; Röhl I.; Lichte A.; Vonhoff S.; Klussmann S.

Article
Light-directed 53 synthesis of complex oligonucleotide microarrays
pp. e35-e35(1)
Authors: Ott M.; Stengele K-P.; Albert T.J.; Norton J.; Richmond T.; Nuwaysir K.; Nuwaysir E.F.; Green R.D.

Article
Data extraction from composite oligonucleotide microarrays
pp. e36-e36(1)
Authors: Astola J.; Shmulevich I.; Cogdell D.; Hamilton S.R.; Zhang W.

Article
RNaseCut: a MALDI mass spectrometry-based method for SNP discovery
pp. e37-e37(1)
Authors: Krebs S.; Meugorac I.; Seichter D.; Förster M.

Article
A simple and cost-effective method for producing small interfering RNAs with high efficacy
pp. e38-e38(1)
Authors: Riedemann J.; Macaulay V.; Sohail M.; Doran G.; Southern E.M.

Article
Mechanisms underlying the impact of humic acids on DNA quantification by SYBR Green I and consequences for the analysis of soils and aquatic sediments
pp. e39-e39(1)
Authors: Zipper H.; Buta C.; Lämmle K.; Brunner H.; Bernhagen J.; Vitzthum F.

Article
Construction and purification of site-specifically modified DNA templates for transcription assays
pp. e40-e40(1)
Authors: Perlow R.A.; Schinecker T.M.; Kim S.J.; Geacintov N.E.; Scicchitano D.A.

Article
A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes
pp. 1805-1812(8)
Authors: Dybvig K.; Firman K.; Murray N.E.; Gromova E.S.; Nagaraja V.; Gumport R.I.; Piekarowicz A.; Halford S.E.; Pingoud A.; Hattman S.; Heitman J.; Rao D.N.; Hornby D.P.; Reich N.; Janulaitis A.; Repin V.E.; Jeltsch A.; Selker E.U.; Shaw P-C.; Josephsen J.; Kiss A.; Stein D.C.; Klaenhammer T.R.; Stoddard B.L.; Kobayashi I.; Szybalski W.; Trautner T.A.; Krüger D.H.; Van Etten J.L.; Lacks S.; Vitor J.M.B.; Marinus M.G.; Miyahara M.; Belfort M.; Bestor T.; Bhagwat A.S.; Bickle T.A.; Blumenthal R.M.; Degtyarev S.K.; Dryden D.T.F.; Roberts R.J.; Bitinaite J.; Kong H.; Morgan R.D.; Raleigh E.; Wilson G.G.; Xu S-y.

Article
A survey of small RNA-encoding genes in Escherichia coli
pp. 1813-1820(8)
Authors: Hershberg R.; Altuvia S.; Margalit H.

Article
A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases
pp. 1821-1829(9)
Author: Bruenn J.A.

Article
Scp160p associates with specific mRNAs in yeast
pp. 1830-1837(8)
Authors: Li A-M.; Watson A.; Fridovich-Keil J.L.

Article
DNA helix: the importance of being GC-rich
pp. 1838-1844(7)
Author: Vinogradov A.E.

Article
Thyroid-specific transcription factors control Hex promoter activity
pp. 1845-1852(8)
Authors: Damante G.; Puppin C.; D’Elia A.V.; Pellizzari L.; Russo D.; Arturi F.; Presta I.; Filetti S.; Bogue C.W.; Denson L.A.

Article
Conditional gene expression by controlling translation with tetracycline-binding aptamers
pp. 1853-1858(6)
Authors: Berens C.; Schroeder R.; Suess B.; Hanson S.; Fink B.; Hillen W.

Article
AINTEGUMENTA utilizes a mode of DNA recognition distinct from that used by proteins containing a single AP2 domain
pp. 1859-1868(10)
Author: Krizek B.A.

Article
A non-redundant microarray of genes for two related bacteria
pp. 1869-1876(8)
Authors: Florea L.D.; Porwollik S.; Frye J.; Blackmer F.; McClelland M.

Article
The human Imp3 and Imp4 proteins form a ternary complex with hMpp10, which only interacts with the U3 snoRNA in 60–80S ribonucleoprotein complexes
pp. 1877-1887(11)
Authors: Gallagher J.E.G.; Baserga S.J.; Granneman S.; Vogelzangs J.; Horstman W.; Venrooij W.J.v.; Pruijn G.J.M.

Article
Functional cooperation between exonucleases and endonucleases—basis for the evolution of restriction enzymes
pp. 1888-1896(9)
Authors: Raghavendra N.K.; Rao D.N.

Article
Influence of DNA torsional rigidity on excision of 7,8-dihydro-8-oxo-2-deoxyguanosine in the presence of opposing abasic sites by human OGG1 protein
pp. 1897-1903(7)
Authors: Dogliotti E.; Cellai L.; Giordano C.; Bjørås M.; Barone F.; Mazzei F.

Article
Pathology-related substitutions in human mitochondrial tRNA^Ile reduce precursor 3 end processing efficiency in vitro
pp. 1904-1912(9)
Authors: Levinger L.; Giegé R.; Florentz C.

Article
Repair of hydrolytic DNA deamination damage in thermophilic bacteria: cloning and characterization of a Vsr endonuclease homolog from Bacillus stearothermophilus
pp. 1913-1920(8)
Authors: Laging M.; Lindner E.; Fritz H-J.; Kramer W.

Article
Molecular recognition properties of IGS-mediated reactions catalyzed by a Pneumocystis carinii group I intron
pp. 1921-1934(14)
Authors: Johnson A.K.; Baum D.A.; Tye J.; Bell M.A.; Testa S.M.

Article
Inhibition of HCV NS3 protease by RNA aptamers in cells
pp. 1935-1943(9)
Authors: Funaji K.; Nishikawa F.; Kakiuchi N.; Fukuda K.; Sekiya S.; Nishikawa S.

Article
What’s in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence
pp. 1944-1954(11)
Authors: Maier J.; Mannhaupt G.; Schulte U.; Montrone C.; Haase D.; Mewes H.W.; Aign V.; Hoheisel J.D.; Fartmann B.; Nyakatura G.; Kempken F.

Article
Specific SR protein-dependent splicing substrates identified through genomic SELEX
pp. 1955-1961(7)
Authors: Kim S.; Shi H.; Lee D-k.; Lis J.T.

Article
Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays
pp. 1962-1968(7)
Authors: Hekstra D.; Taussig A.R.; Magnasco M.; Naef F.

Article
Transcription of genes encoding trans-acting factors required for rRNA maturation/ribosomal subunit assembly is coordinately regulated with ribosomal protein genes and involves Rap1 in Saccharomyces cerevisiae
pp. 1969-1973(5)
Authors: Miyoshi K.; Shirai C.; Mizuta K.

Article
Conserved sequence elements associated with exon skipping
pp. 1974-1983(10)
Authors: Miriami E.; Margalit H.; Sperling R.

Article
3-Exonuclease resistance of DNA oligodeoxynucleotides containing O⁶-[4-oxo-4-(3-pyridyl)butyl]guanine
pp. 1984-1994(11)
Authors: Park S.; Seetharaman M.; Ogdie A.; Ferguson D.; Tretyakova N.

Article
An approach to identify over-represented cis-elements in related sequences
pp. 1995-2005(11)
Authors: Zheng J.; Wu J.; Sun Z.

Article
Analysis of the conformational energy landscape of human snRNA with a metric based on tree representation of RNA structures
pp. 2006-2013(8)
Authors: Kitagawa J.; Futamura Y.; Yamamoto K.

Article
Self-association and conformational properties of RAG1: implications for formation of the V(D)J recombinase
pp. 2014-2023(10)
Authors: Godderz L.J.; Rahman N.S.; Risinger G.M.; Arbuckle J.L.; Rodgers K.K.