Molecular Biology and Evolution

Microsatellite Null Alleles and Estimation of Population Differentiation
pp. 621-631(11)
Authors: Chapuis, Marie-Pierre; Estoup, Arnaud

Bats with hATs: Evidence for Recent DNA Transposon Activity in Genus Myotis
pp. 632-639(8)
Authors: Ray, David A.; Pagan, Heidi J. T.; Thompson, Michelle L.; Stevens, Richard D.

indel-Seq-Gen: A New Protein Family Simulator Incorporating Domains, Motifs, and Indels
pp. 640-649(10)
Authors: Strope, Cory L.; Scott, Stephen D.; Moriyama, Etsuko N.

Phylogenetic Methodology for Detecting Protein Interactions
pp. 650-659(10)
Authors: Waddell, Peter J.; Kishino, Hirohisa; Ota, Rissa

Adaptation of a Diverse Simian Immunodeficiency Virus Population to a New Host Is Revealed through a Systematic Approach to Identify Amino Acid Sites under Selection
pp. 660-669(10)
Authors: Vanderford, Thomas H.; Demma, Linda J.; Feinberg, Mark B.; Staprans, Silvija I.

Evidence of Interaction Network Evolution by Whole-Genome Duplications: A Case Study in MADS-Box Proteins
pp. 670-678(9)
Authors: Veron, Amelie S.; Kaufmann, Kerstin; Bornberg-Bauer, Erich

Not Born Equal: Increased Rate Asymmetry in Relocated and Retrotransposed Rodent Gene Duplicates
pp. 679-686(8)
Authors: Cusack, Brian P.; Wolfe, Kenneth H.

Divergent Haplotypes and Human History as Revealed in a Worldwide Survey of X-Linked DNA Sequence Variation
pp. 687-698(12)
Authors: Shimada, Makoto K.; Panchapakesan, Karuna; Tishkoff, Sarah A.; Nato, Alejandro Q.; Hey, Jody

The Mitochondrial Genome of the Moss Physcomitrella patens Sheds New Light on Mitochondrial Evolution in Land Plants
pp. 699-709(11)
Authors: Terasawa, Kimihiro; Odahara, Masaki; Kabeya, Yukihiro; Kikugawa, Tatsuhiko; Sekine, Yasuhiko; Fujiwara, Makoto; Sato, Naoki

Genetic Evidence for the Convergent Evolution of Light Skin in Europeans and East Asians
pp. 710-722(13)
Authors: Norton, Heather L.; Kittles, Rick A.; Parra, Esteban; McKeigue, Paul; Mao, Xianyun; Cheng, Keith; Canfield, Victor A.; Bradley, Daniel G.; McEvoy, Brian; Shriver, Mark D.

Phylogenetic Analyses of Nuclear, Mitochondrial, and Plastid Multigene Data Sets Support the Placement of Mesostigma in the Streptophyta
pp. 723-731(9)
Authors: Rodríguez-Ezpeleta, Naiara; Philippe, Hervé; Becker, Burkhard; Melkonian, Michael

Drosophila mojoless, a Retroposed GSK-3, Has Functionally Diverged to Acquire an Essential Role in Male Fertility
pp. 732-742(11)
Authors: Kalamegham, Rasika; Sturgill, David; Siegfried, Esther; Oliver, Brian

Origin and Evolution of the Mitochondrial Aminoacyl-tRNA Synthetases
pp. 743-756(14)
Authors: Brindefalk, Björn; Viklund, Johan; Larsson, Daniel; Thollesson, Mikael; Andersson, Siv G. E.

Whole-mtDNA Genome Sequence Analysis of Ancient African Lineages
pp. 757-768(12)
Authors: Gonder, Mary Katherine; Mortensen, Holly M.; Reed, Floyd A.; de Sousa, Alexandra; Tishkoff, Sarah A.

Multilocus Analysis of Nucleotide Variation and Speciation in Oryza officinalis and Its Close Relatives
pp. 769-783(15)
Authors: Zhang, Lin-Bin; Ge, Song

Comparison of Pax1/9 Locus Reveals 500-Myr-Old Syntenic Block and Evolutionary Conserved Noncoding Regions
pp. 784-791(8)
Authors: Wang, Wei; Zhong, Jing; Su, Bing; Zhou, Yan; Wang, Yi-Quan

Toll-Like Receptors Are Part of the Innate Immune Defense System of Sponges (Demospongiae: Porifera)
pp. 792-804(13)
Authors: Wiens, Matthias; Korzhev, Michael; Perović-Ottstadt, Sanja; Luthringer, Bérengère; Brandt, David; Klein, Stefanie; Müller, Werner E. G.

Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of γ-Proteobacteria
pp. 805-813(9)
Authors: Homma, Keiichi; Fukuchi, Satoshi; Nakamura, Yoji; Gojobori, Takashi; Nishikawa, Ken

Chimpanzee, Orangutan, Mouse, and Human Cell Cycle Promoters Exempt CCAAT Boxes and CHR Elements from Interspecies Differences
pp. 814-826(13)
Authors: Müller, Gerd A.; Heissig, Florian; Engeland, Kurt

One Billion Years of bZIP Transcription Factor Evolution: Conservation and Change in Dimerization and DNA-Binding Site Specificity
pp. 827-835(9)
Authors: Amoutzias, GD; Veron, AS; Weiner, J; Robinson-Rechavi, M; Bornberg-Bauer, E; Oliver, SG; Robertson, DL

Gene Expression and Protein Length Influence Codon Usage and Rates of Sequence Evolution in Populus tremula
pp. 836-844(9)
Authors: Ingvarsson, Pär K.

Phylogenetic Evidence for Deleterious Mutation Load in RNA Viruses and Its Contribution to Viral Evolution
pp. 845-852(8)
Authors: Pybus, Oliver G.; Rambaut, Andrew; Belshaw, Robert; Freckleton, Robert P.; Drummond, Alexei J.; Holmes, Edward C.

The Evolutionary History of Human and Chimpanzee Y-Chromosome Gene Loss
pp. 853-859(7)
Authors: Perry, George H.; Tito, Raul Y.; Verrelli, Brian C.

Rearrangement Rate following the Whole-Genome Duplication in Teleosts
pp. 860-867(8)
Authors: Sémon, Marie; Wolfe, Kenneth H.

No Evidence for an mtDNA Role in Sperm Motility: Data from Complete Sequencing of Asthenozoospermic Males
pp. 868-874(7)
Authors: Pereira, Luísa; Gonçalves, João; Franco-Duarte, Ricardo; Silva, Júlia; Rocha, Tiago; Arnold, Christiane; Richards, Martin; Macaulay, Vincent

Multilocus Analysis of Nucleotide Variation of Oryza sativa and Its Wild Relatives: Severe Bottleneck during Domestication of Rice
pp. 875-888(14)
Authors: Zhu, Qihui; Zheng, Xiaoming; Luo, Jingchu; Gaut, Brandon S.; Ge, Song

Paleontological Evidence to Date the Tree of Life
pp. 889-891(3)

The Transcriptomics of Ecological Convergence between 2 Limnetic Coregonine Fishes (Salmonidae)
pp. 892-892(1)