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Molecular Biology and Evolution publishes research at the interface between molecular and evolutionary biology. The journal publishes investigations of molecular evolutionary patterns and processes, tests of evolutionary hypotheses that use molecular data, and studies that use molecular evolutionary information to address questions about biological function at all levels of organization.

Publisher: Oxford University Press

Volume 24, Number 1, January 2007
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MtArt: A New Model of Amino Acid Replacement for Arthropoda
pp. 1-5(5)
Authors: Abascal, Federico; Posada, David; Zardoya, Rafael

Lack of Resolution in the Animal Phylogeny: Closely Spaced Cladogeneses or Undetected Systematic Errors?
pp. 6-9(4)
Authors: Baurain, Denis; Brinkmann, Henner; Philippe, Hervé

Predicting Gene Expression Level from Codon Usage Bias
pp. 10-12(3)
Authors: Henry, Ian; Sharp, Paul M.

A Comparative Analysis of numt Evolution in Human and Chimpanzee
pp. 13-18(6)
Authors: Hazkani-Covo, Einat; Graur, Dan

Mitochondrial Diversity of Early-Branching Metazoa Is Revealed by the Complete mt Genome of a Haplosclerid Demosponge
pp. 19-22(4)
Authors: Erpenbeck, D; Voigt, O; Adamski, M; Adamska, M; Hooper, JNA; Wörheide, G; Degnan, BM

Methylation-Dependent Transition Rates Are Dependent on Local Sequence Lengths and Genomic Regions
pp. 23-25(3)
Authors: Zhao, Zhongming; Jiang, Cizhong

Paleontological Evidence to Date the Tree of Life
pp. 26-53(28)
Authors: Benton, Michael J.; Donoghue, Philip C. J.

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts
pp. 54-62(9)
Authors: Rogers, Matthew B.; Gilson, Paul R.; Su, Vanessa; McFadden, Geoffrey I.; Keeling, Patrick J.

Supernetwork Identifies Multiple Events of Plastid trnF(GAA) Pseudogene Evolution in the Brassicaceae
pp. 63-73(11)
Authors: Koch, Marcus A.; Dobeš, Christoph; Kiefer, Christiane; Schmickl, Roswitha; Klimeš, Leoš; Lysak, Martin A.

Concerted Evolution of Duplicated Control Regions within an Ostracod Mitochondrial Genome
pp. 74-78(5)
Authors: Ogoh, Katsunori; Ohmiya, Yoshihiro

Functional Classification of Amino Acid Decarboxylases from the Alanine Racemase Structural Family by Phylogenetic Studies
pp. 79-89(11)
Authors: Kidron, Heidi; Repo, Susanna; Salminen, Tiina A.

Fossil Calibration of Molecular Divergence Infers a Moderate Mutation Rate and Recent Radiations for Pinus
pp. 90-101(12)
Authors: Ann, Willyard; Syring, John; Gernandt, David S.; Liston, Aaron; Cronn, Richard

Vector Competence of Glossina palpalis gambiensis for Trypanosoma brucei s.l. and Genetic Diversity of the Symbiont Sodalis glossinidius
pp. 102-109(8)
Authors: Geiger, Anne; Ravel, Sophie; Mateille, Thierry; Janelle, Jérome; Patrel, Delphine; Cuny, Gérard; Frutos, Roger

Rate and Polarity of Gene Fusion and Fission in Oryza sativa and Arabidopsis thaliana
pp. 110-121(12)
Authors: Nakamura, Yoji; Itoh, Takeshi; Martin, William

Selective Constraints on Codon Usage of Nuclear Genes from Arabidopsis thaliana
pp. 122-129(8)
Authors: Morton, Brian R.; Wright, Stephen I.

Rooting the Tree of Life Using Nonubiquitous Genes
pp. 130-136(7)
Authors: Lake, James A.; Herbold, Craig W.; Rivera, Maria C.; Servin, Jacqueline A.; Skophammer, Ryan G.

Genome-Wide Patterns of Expression in Drosophila Pure Species and Hybrid Males. II. Examination of Multiple-Species Hybridizations, Platforms, and Life Cycle Stages
pp. 137-145(9)
Authors: Moehring, Amanda J.; Teeter, Katherine C.; Noor, Mohamed A. F.

The Complex Evolutionary History of Gorillas: Insights from Genomic Data
pp. 146-158(13)
Authors: Thalmann, O; Fischer, A; Lankester, F; Pääbo, S; Vigilant, L

Evolutionary Model Selection with a Genetic Algorithm: A Case Study Using Stem RNA
pp. 159-170(12)
Authors: Kosakovsky Pond, Sergei L.; Mannino, Frank V.; Gravenor, Michael B.; Muse, Spencer V.; Frost, Simon D. W.

Patterns of Intron Loss and Gain in Plants: Intron Loss-Dominated Evolution and Genome-Wide Comparison of O. sativa and A. thaliana
pp. 171-181(11)
Authors: Roy, Scott William; Penny, David

Recurrent Positive Selection at Bgcn, a Key Determinant of Germ Line Differentiation, Does Not Appear to be Driven by Simple Coevolution with Its Partner Protein Bam
pp. 182-191(10)
Authors: Bauer DuMont, Vanessa L.; Flores, Heather A.; Wright, Mark H.; Aquadro, Charles F.

Molecular Architecture of the DNA-Binding Region and Its Relationship to Classification of Basic Helix-Loop-Helix Proteins
pp. 192-202(11)
Authors: Atchley, William R.; Zhao, Jieping

Evolution of the Rho Family of Ras-Like GTPases in Eukaryotes
pp. 203-216(14)
Authors: Boureux, Anthony; Vignal, Emmanuel; Faure, Sandrine; Fort, Philippe

Independent Wheat B and G Genome Origins in Outcrossing Aegilops Progenitor Haplotypes
pp. 217-227(11)
Authors: Kilian, B; Özkan, H; Deusch, O; Effgen, S; Brandolini, A; Kohl, J; Martin, W; Salamini, F

Maximum Likelihood Estimation of Ancestral Codon Usage Bias Parameters in Drosophila
pp. 228-235(8)
Authors: Nielsen, Rasmus; Bauer DuMont, Vanessa L.; Hubisz, Melissa J.; Aquadro, Charles F.

Comparative Genome Analysis of the Neurexin Gene Family in Danio rerio: Insights into Their Functions and Evolution
pp. 236-252(17)
Authors: Rissone, Alberto; Monopoli, Matteo; Beltrame, Monica; Bussolino, Federico; Cotelli, Franco

Molecular Characterization of Crustacean Visual Pigments and the Evolution of Pancrustacean Opsins
pp. 253-268(16)
Authors: Porter, Megan L.; Cronin, Thomas W.; McClellan, David A.; Crandall, Keith A.

Mitochondrial Genomes and Avian Phylogeny: Complex Characters and Resolvability without Explosive Radiations
pp. 269-280(12)
Authors: Gibb, Gillian C.; Kardailsky, Olga; Kimball, Rebecca T.; Braun, Edward L.; Penny, David

Morphological Change Caused by Loss of the Taxon-Specific Polyalanine Tract in Hoxd-13
pp. 281-287(7)
Authors: Anan, Keiiti; Yoshida, Nobuaki; Kataoka, Yuki; Sato, Mitsuharu; Ichise, Hirotake; Nasu, Makoto; Ueda, Shintaroh

Performance of a New Invariants Method on Homogeneous and Nonhomogeneous Quartet Trees
pp. 288-293(6)
Authors: Casanellas, M; Fernández-Sánchez, J

Testing for Covarion-like Evolution in Protein Sequences
pp. 294-305(12)
Authors: Wang, Huai-Chun; Spencer, Matthew; Susko, Edward; Roger, Andrew J.

Pervasive Adaptive Evolution among Interactors of the Drosophila Hybrid Inviability Gene, Nup96
pp. 306-314(9)
Authors: Presgraves, Daven C.; Stephan, Wolfgang

Evaluation of Whether Accelerated Protein Evolution in Chordates Has Occurred before, after, or Simultaneously with Gene Duplication
pp. 315-323(9)
Authors: Johnston, Catrióna R.; O'Dushlaine, Colm; Fitzpatrick, David A.; Edwards, Richard J.; Shields, Denis C.

Inferring Phylogenetic Networks by the Maximum Parsimony Criterion: A Case Study
pp. 324-337(14)
Authors: Jin, Guohua; Nakhleh, Luay; Snir, Sagi; Tuller, Tamir

Insertion Events of CR1 Retrotransposable Elements Elucidate the Phylogenetic Branching Order in Galliform Birds
pp. 338-347(10)
Authors: Kaiser, Vera B.; van Tuinen, Marcel; Ellegren, Hans

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