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Molecular Biology and Evolution publishes research at the interface between molecular and evolutionary biology. The journal publishes investigations of molecular evolutionary patterns and processes, tests of evolutionary hypotheses that use molecular data, and studies that use molecular evolutionary information to address questions about biological function at all levels of organization.

Publisher: Oxford University Press

Volume 23, Number 2, 20 February 2006
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A Test of the Master Gene Hypothesis for Interspersed Repetitive DNA Sequences
pp. 235-239(5)
Authors: Johnson, Louise J.; Brookfield, John F. Y.

Apparent Trends of Amino Acid Gain and Loss in Protein Evolution Due to Nearly Neutral Variation
pp. 240-244(5)
Author: McDonald, John H.

Rate Asymmetry After Genome Duplication Causes Substantial Long-Branch Attraction Artifacts in the Phylogeny of Saccharomyces Species
pp. 245-253(9)
Authors: Fares, Mario A.; Byrne, Kevin P.; Wolfe, Kenneth H.

Application of Phylogenetic Networks in Evolutionary Studies
pp. 254-267(14)
Authors: Huson, Daniel H.; Bryant, David

Dense Taxonomic EST Sampling and Its Applications for Molecular Systematics of the Coleoptera (Beetles)
pp. 268-278(11)
Authors: Hughes, Joseph; Longhorn, Stuart J.; Theodorides, Kosmas; de Riva, Alessandra; Mejia-Chang, Monica; Foster, Peter G.; Vogler, Alfried P.

The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications
pp. 279-291(13)
Authors: Chang, Ching-Chun; Lin, Hsien-Chia; Chow, Teh-Yuan; Chen, Hong-Hwa; Chen, Wen-Huei; Cheng, Chia-Hsiung; Lin, Chung-Yen; Liu, Shu-Mei; Chang, Chien-Chang; Chaw, Shu-Miaw

Contrasting Modes of Evolution Between Vertebrate Sweet/Umami Receptor Genes and Bitter Receptor Genes
pp. 292-300(9)
Authors: Shi, Peng; Zhang, Jianzhi

Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers
pp. 301-309(9)
Authors: Parmley, Joanna L.; Chamary, J. V.; Hurst, Laurence D.

The “Domino Theory” of Gene Death: Gradual and Mass Gene Extinction Events in Three Lineages of Obligate Symbiotic Bacterial Pathogens
pp. 310-316(7)
Authors: Dagan, Tal; Blekhman, Ran; Graur, Dan

Variation in Positive Selection in Termite GNBPs and Relish
pp. 317-326(10)
Authors: Bulmer, Mark S.; Crozier, Ross H.

A Single Determinant Dominates the Rate of Yeast Protein Evolution
pp. 327-337(11)
Authors: Drummond, D. Allan; Raval, Alpan; Wilke, Claus O.

Ancient Origin of Elicitin Gene Clusters in Phytophthora Genomes
pp. 338-351(14)
Authors: Jiang, Rays H. Y.; Tyler, Brett M.; Whisson, Stephen C.; Hardham, Adrienne R.; Govers, Francine

On the Correlation Between Composition and Site-Specific Evolutionary Rate: Implications for Phylogenetic Inference
pp. 352-364(13)
Authors: Gowri-Shankar, Vivek; Rattray, Magnus

Genome Plasticity and ori-ter Rebalancing in Salmonella typhi
pp. 365-371(7)
Authors: Liu, Gui-Rong; Liu, Wei-Qiao; Johnston, Randal N.; Sanderson, Kenneth E.; Li, Shao-Xian; Liu, Shu-Lin

A New Method for Estimating Nonsynonymous Substitutions and Its Applications to Detecting Positive Selection
pp. 372-379(8)
Authors: Tang, Hua; Wu, Chung-I

Origin and Evolution of the Chloroplast trnK (matK) Intron: A Model for Evolution of Group II Intron RNA Structures
pp. 380-391(12)
Authors: Hausner, Georg; Olson, Robert; Simon, Dawn; Johnson, Ian; Sanders, Erin R.; Karol, Kenneth G.; McCourt, Richard M.; Zimmerly, Steven

An Evolutionary Space-Time Model with Varying Among-Site Dependencies
pp. 392-400(9)
Authors: Stern, Adi; Pupko, Tal

Adaptive Loss of an Old Duplicated Gene During Incipient Speciation
pp. 401-410(10)
Authors: Greenberg, Anthony J.; Moran, Jennifer R.; Fang, Shu; Wu, Chung-I

The Trypanosoma cruzi L1Tc and NARTc Non-LTR Retrotransposons Show Relative Site Specificity for Insertion
pp. 411-420(10)
Authors: Bringaud, Frédéric; Bartholomeu, Daniella C.; Blandin, Gaëlle; Delcher, Arthur; Baltz, Théo; El-Sayed, Najib M. A.; Ghedin, Elodie

Estimation of Amino Acid Residue Substitution Rates at Local Spatial Regions and Application in Protein Function Inference: A Bayesian Monte Carlo Approach
pp. 421-436(16)
Authors: Tseng, Yan Y.; Liang, Jie

Widespread Recombination Throughout Wolbachia Genomes
pp. 437-449(13)
Authors: Baldo, Laura; Bordenstein, Seth; Wernegreen, Jennifer J.; Werren, John H.

The Origins of Eukaryotic Gene Structure
pp. 450-468(19)
Author: Lynch, Michael

Expression Pattern Shifts Following Duplication Indicative of Subfunctionalization and Neofunctionalization in Regulatory Genes of Arabidopsis
pp. 469-478(10)
Authors: Duarte, Jill M.; Cui, Liying; Wall, P. Kerr; Zhang, Qing; Zhang, Xiaohong; Leebens-Mack, Jim; Ma, Hong; Altman, Naomi; dePamphilis, Claude W.

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