Molecular Biology and Evolution

How Not to Search for Isochores: A Reply to Cohen et al
pp. 2315-2317(3)
Authors: Clay, Oliver; Bernardi, Giorgio

Selectionism and Neutralism in Molecular Evolution
pp. 2318-2342(25)
Author: Nei, Masatoshi

Mosaic Origin of the Heme Biosynthesis Pathway in Photosynthetic Eukaryotes
pp. 2343-2353(11)
Authors: Oborník, Miroslav; Green, Beverley R.

Recombination Shapes the Natural Population Structure of the Hyperthermophilic Archaeon Sulfolobus islandicus
pp. 2354-2361(8)
Authors: Whitaker, Rachel J.; Grogan, Dennis W.; Taylor, John W.

Geographical Distribution of Selected and Putatively Neutral SNPs in Southeast Asian Malaria Parasites
pp. 2362-2374(13)
Authors: Anderson, Tim J. C.; Nair, Shalini; Sudimack, Dan; Williams, Jeff T.; Mayxay, Mayfong; Newton, Paul N.; Guthmann, Jean-Paul; Smithuis, Frank M.; Hien, Tran Tinh; van den Broek, Ingrid V.F.; White, Nicholas J.; Nosten, François

Site-to-Site Variation of Synonymous Substitution Rates
pp. 2375-2385(11)
Authors: Pond, Sergei Kosakovsky; Muse, Spencer V.

Evolutionary Change of the Numbers of Homeobox Genes in Bilateral Animals
pp. 2386-2394(9)
Authors: Nam, Jongmin; Nei, Masatoshi

Phylogenomics of Life-Or-Death Switches in Multicellular Animals: Bcl-2, BH3-Only, and BNip Families of Apoptotic Regulators
pp. 2395-2416(22)
Authors: Aouacheria, Abdel; Brunet, Frédéric; Gouy, Manolo

Subfunctionalization of Expression and Peptide Domains Following the Ancient Duplication of the Proopiomelanocortin Gene in Teleost Fishes
pp. 2417-2427(11)
Authors: de Souza, Flávio S. J.; Bumaschny, Viviana F.; Rubinstein, Marcelo

Structural and Functional Evolution of Three Cardiac Natriuretic Peptides
pp. 2428-2434(7)
Authors: Inoue, Koji; Sakamoto, Takashi; Yuge, Shinya; Iwatani, Hozi; Yamagami, Sayaka; Tsutsumi, Makiko; Hori, Hiroshi; Cerra, Maria Carmela; Tota, Bruno; Suzuki, Norio; Okamoto, Nobuaki; Takei, Yoshio

The Population History of Extant and Extinct Hyenas
pp. 2435-2443(9)
Authors: Rohland, Nadin; Pollack, Joshua L.; Nagel, Doris; Beauval, Cédric; Airvaux, Jean; Pääbo, Svante; Hofreiter, Michael

Gene Conversion and the Evolution of Three Leucine-Rich Repeat Gene Families in Arabidopsis thaliana
pp. 2444-2456(13)
Authors: Mondragon-Palomino, Mariana; Gaut, Brandon S.

Statistical Alignment of Retropseudogenes and Their Functional Paralogs
pp. 2457-2471(15)
Authors: Csűrös, Miklós; Miklós, István

Evaluation of an Improved Branch-Site Likelihood Method for Detecting Positive Selection at the Molecular Level
pp. 2472-2479(8)
Authors: Zhang, Jianzhi; Nielsen, Rasmus; Yang, Ziheng

Genetic Diversity and the Evolutionary History of Plant Immunity Genes in Two Species of Zea
pp. 2480-2490(11)
Authors: Moeller, David A.; Tiffin, Peter

Evidence for a Dispersed Hox Gene Cluster in the Platyhelminth Parasite Schistosoma mansoni
pp. 2491-2503(13)
Authors: Pierce, Raymond J.; Wu, Wenjie; Hirai, Hirohisa; Ivens, Al; Murphy, Lee D.; Noël, Christophe; Johnston, David A.; Artiguenave, François; Adams, Martin; Cornette, Jocelyne; Viscogliosi, Eric; Capron, Monique; Balavoine, Guillaume

Human SNPs Reveal No Evidence of Frequent Positive Selection
pp. 2504-2507(4)
Authors: Zhang, Liqing; Li, Wen-Hsiung

Inference of the Phylogenetic Position of Oxymonads Based on Nine Genes: Support for Metamonada and Excavata
pp. 2508-2518(11)
Authors: Hampl, Vladimír; Horner, David S.; Dyal, Patricia; Kulda, Jaroslav; Flegr, Jaroslav; Foster, Peter G.

Intragenic Hill-Robertson Interference Influences Selection Intensity on Synonymous Mutations in Drosophila
pp. 2519-2530(12)
Authors: Comeron, Josep M.; Guthrie, Theodore B.

A Bayesian Model Comparison Approach to Inferring Positive Selection
pp. 2531-2540(10)
Authors: Scheffler, K.; Seoighe, C.

Mitochondrial DNA from Prehistoric Canids Highlights Relationships Between Dogs and South-East European Wolves
pp. 2541-2551(11)
Authors: Verginelli, Fabio; Capelli, Cristian; Coia, Valentina; Musiani, Marco; Falchetti, Mario; Ottini, Laura; Palmirotta, Raffaele; Tagliacozzo, Antonio; De Grossi Mazzorin, Iacopo; Mariani-Costantini, Renato