Molecular Biology and Evolution

Original Article
Inferences on the Evolutionary History of the S-Element Family of Drosophila melanogaster
pp. 1183-1187(5)
Authors: Maside X.; Bartolome´ C.; Charlesworth B.

Original Article
Loss of DNA Recombinational Repair Enzymes in the Initial Stages of Genome Degeneration
pp. 1188-1194(7)
Authors: Dale C.; Wang B.; Moran N.; Ochman H.

Original Article
Phylogenetic Network and Physicochemical Properties of Nonsynonymous Mutations in the Protein-Coding Genes of Human Mitochondrial DNA
pp. 1195-1210(16)
Authors: Moilanen J.S.; Majamaa K.

Original Article
Molecular Phylogenies and Divergence Times of Sea Urchin Species of Strongylocentrotidae, Echinoida
pp. 1211-1221(11)
Author: Lee Y-H.

Original Article
SIRE1, an Endogenous Retrovirus Family from Glycine max, Is Highly Homogeneous and Evolutionarily Young
pp. 1222-1230(9)
Authors: Laten H.M.; Havecker E.R.; Farmer L.M.; Voytas D.F.

Original Article
Estimating the Distribution of Selection Coefficients from Phylogenetic Data with Applications to Mitochondrial and Viral DNA
pp. 1231-1239(9)
Authors: Nielsen R.; Yang Z.

Original Article
Assessing the Phylogenetic Utility of Four Mitochondrial Genes and a Nuclear Intron in the Asian Pit Viper Genus, Trimeresurus: Separate, Simultaneous, and Conditional Data Combination Analyses
pp. 1240-1251(12)
Authors: Creer S.; Malhotra A.; Thorpe R.S.

Original Article
A Codon-Based Model of Host-Specific Selection in Parasites, with an Application to the Influenza A Virus
pp. 1252-1259(8)
Authors: Forsberg R.; Christiansen F.B.

Original Article
R5 Retrotransposons Insert into a Family of Infrequently Transcribed 28S rRNA Genes of Planaria
pp. 1260-1270(11)
Authors: Burke W.D.; Singh D.; Eickbush T.H.

Original Article
Three Neuropeptide Y Receptor Genes in the Spiny Dogfish, Squalus acanthias, Support en Bloc Duplications in Early Vertebrate Evolution
pp. 1271-1280(10)
Authors: Salaneck E.; Ardell D.H.; Larson E.T.; Larhammar D.

Original Article
Gene Diversity Patterns at 10 X-Chromosomal Loci in Humans and Chimpanzees
pp. 1281-1289(9)
Authors: Kitano T.; Schwarz C.; Nickel B.; Pa¨a¨bo S.

Original Article
Systematic Phylogenomic Evidence of en Bloc Duplication of the Ancestral 8p11.21–8p21.3-like Region
pp. 1290-1298(9)
Authors: Vienne A.; Rasmussen J.; Abi-Rached L.; Pontarotti P.; Gilles A.

Original Article
GS-Aligner: A Novel Tool for Aligning Genomic Sequences Using Bit-Level Operations
pp. 1299-1309(11)
Authors: Shih A.C-C.; Li W-H.

Original Article
Parallel Functional Changes in the Digestive RNases of Ruminants and Colobines by Divergent Amino Acid Substitutions
pp. 1310-1317(8)
Author: Zhang J.

Original Article
Adaptation in the env Gene of HIV-1 and Evolutionary Theories of Disease Progression
pp. 1318-1325(8)
Author: Williamson S.

Original Article
The Effect of Positive Selection on a Sexual Reproduction Gene in Thalassiosira weissflogii (Bacillariophyta): Results Obtained from Maximum-Likelihood and Parsimony-Based Methods
pp. 1326-1328(3)
Author: Sorhannus U.

Original Article
Nonneutral Admixture of Immigrant Genotypes in African Drosophila melanogaster Populations from Zimbabwe
pp. 1329-1337(9)
Authors: Kauer M.; Dieringer D.; Schlo¨tterer C.

Original Article
Following the LINEs: An Analysis of Primate Genomic Variation at Human-Specific LINE-1 Insertion Sites
pp. 1338-1348(11)
Authors: Vincent B.J.; Myers J.S.; Ho H.J.; Kilroy G.E.; Walker J.A.; Watkins W.S.; Jorde L.B.; Batzer M.A.

Original Article
Recently Integrated Alu Elements and Human Genomic Diversity
pp. 1349-1361(13)
Authors: Salem A-H.; Kilroy G.E.; Watkins W.S.; Jorde L.B.; Batzer M.A.

Original Article
Hop, an Active Mutator-like Element in the Genome of the Fungus Fusarium oxysporum
pp. 1362-1375(14)
Authors: Chalvet F.; Grimaldi C.; Kaper F.; Langin T.; Daboussi M-J.