Bioinformatics

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pp. 4199-4200(2)
Authors: Blaschke, Christian; Yeh, Alexander; Camon, Evelyn; Colosimo, Marc; Apweiler, Rolf; Hirschman, Lynette; Valencia, Alfonso

An attempt to define allergen-specific molecular surface features: a bioinformatic approach
pp. 4201-4204(4)
Authors: Furmonaviciene, Ruta; Sutton, Brian J.; Glaser, Fabian; Laughton, Charlie A.; Jones, Nick; Sewell, Herb F.; Shakib, Farouk

Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
pp. 4205-4208(4)
Authors: Wachi, Shinichiro; Yoneda, Ken; Wu, Reen

Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
pp. 4209-4215(7)
Authors: Boyer, Frédéric; Morgat, Anne; Labarre, Laurent; Pothier, Joël; Viari, Alain

Discovering hidden viral piracy
pp. 4216-4222(7)
Authors: Kim, Eddo; Kliger, Yossef

Discrimination of outer membrane proteins using support vector machines
pp. 4223-4229(7)
Authors: Park, Keun-Joon; Gromiha, M. Michael; Horton, Paul; Suwa, Makiko

Bioinformatics analyses of circular dichroism protein reference databases
pp. 4230-4238(9)
Author: Janes, Robert W.

Profile-based direct kernels for remote homology detection and fold recognition
pp. 4239-4247(9)
Authors: Rangwala, Huzefa; Karypis, George

Pcons5: combining consensus, structural evaluation and fold recognition scores
pp. 4248-4254(7)
Authors: Wallner, Björn; Elofsson, Arne

Noise and rank-dependent geometrical filter improves sensitivity of highly specific discovery by microarrays
pp. 4255-4262(8)
Author: Fathallah-Shaykh, Hassan M.

Sample size determination for the false discovery rate
pp. 4263-4271(9)
Authors: Pounds, Stan; Cheng, Cheng

The influence of missing value imputation on detection of differentially expressed genes from microarray data
pp. 4272-4279(8)
Authors: Scheel, Ida; Aldrin, Magne; Glad, Ingrid K.; Sørum, Ragnhild; Lyng, Heidi; Frigessi, Arnoldo

A note on using permutation-based false discovery rate estimates to compare different analysis methods for microarray data
pp. 4280-4288(9)
Authors: Xie, Yang; Pan, Wei; Khodursky, Arkady B.

Improved approach for proteochemometrics modeling: application to organic compound—amine G protein-coupled receptor interactions
pp. 4289-4296(8)
Authors: Lapinsh, Maris; Prusis, Peteris; Uhlén, Staffan; Wikberg, Jarl E. S.

Mapping PDB chains to UniProtKB entries
pp. 4297-4301(5)
Author: Martin, Andrew C. R.

GARSA: genomic analysis resources for sequence annotation
pp. 4302-4303(2)
Authors: Dávila, Alberto M. R.; Lorenzini, Daniel M.; Mendes, Pablo N.; Satake, Thiago S.; Sousa, Gabriel R.; Campos, Linair M.; Mazzoni, Camila J.; Wagner, Glauber; Pires, Paulo F.; Grisard, Edmundo C.; Cavalcanti, Maria C. R.; Campos, Maria Luiza M.

CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences
pp. 4304-4306(3)
Authors: Hindemitt, Tobias; Mayer, Klaus F. X.

OxfordGrid: a web interface for pairwise comparative map views
pp. 4307-4308(2)
Authors: Yang, Hongyu; Gingle, Alan R.

HapSim: a simulation tool for generating haplotype data with pre-specified allele frequencies and LD coefficients
pp. 4309-4311(3)
Author: Montana, Giovanni

ATID: a web-oriented database for collection of publicly available alternative translational initiation events
pp. 4312-4314(3)
Authors: Cai, Jun; Zhang, Jing; Huang, Ying; Li, Yanda

MACiE: a database of enzyme reaction mechanisms
pp. 4315-4316(2)
Authors: Holliday, Gemma L.; Bartlett, Gail J.; Almonacid, Daniel E.; O'Boyle, Noel M.; Murray-Rust, Peter; Thornton, Janet M.; Mitchell, John B. O.

Erratum
pp. 4317-4317(1)

Erratum
pp. 4318-4318(1)