The SRS 3D module: integrating structures, sequences and features

Authors: Seán I. O'Donoghue; Joachim E. W. Meyer; Andrea Schafferhans; Karsten Fries

Source: Bioinformatics, Volume 20, Number 15, 12 October 2004 , pp. 2476-2478(3)

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Abstract:

Summary: In this paper we present SRS 3D, a new service that allows users to easily and rapidly find all related structures for a given target sequence; structures can then be viewed together with sequences, alignments and sequence features (currently from UniProt, InterPro and PDB). Extensive user feedback confirms that SRS 3D is intuitive and useful especially for those not expert in structures.

Availability: An SRS 3D server is provided at http://srs3d.ebi.ac.uk/

Supplementary information: Complete documentation is available (click the ‘Help’ button after login). Product information can be found at http://www.lionbioscience.com/SRS3D/products/srs/srs-3d

Keywords: JEL classifications: R30; C5; L60

Document Type: Research article

DOI: http://dx.doi.org/10.1093/bioinformatics/bth260

Publication date: 2004-10-12

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The leading journal in its field, Bioinformatics publishes the highest quality scientific papers and review articles of interest to academic and industrial researchers. Its main focus is on new developments in genome bioinformatics and computational biology. Two distinct sections within the journal - Discovery Notes and Application Notes- focus on shorter papers; the former reporting biologically interesting discoveries using computational methods, the latter exploring the applications used for experiments.