Molecular Biology Reports

Network-Based Selectivity of Antiparasitic Inhibitors
pp. 1-5(5)
Authors: Bakker B.M.; Assmus H.E.; Bruggeman F.; Haanstra J.R.; Klipp E.; Westerhoff H.

Metabolic Control Analysis Aimed at the Ribose Synthesis Pathways of Tumor Cells: A New Strategy for Antitumor Drug Development
pp. 7-12(6)
Authors: Boren J.; Montoya A.R.; de Atauri P.; Comin-Anduix B.; Cortes A.; Centelles J.J.; Frederiks W.M.; Van Noorden C.J.F.; Cascante M.

Application of Modular Control Analysis to Inhibition of the Adenine Nucleotide Translocator by Palmitoyl-CoA
pp. 13-16(4)
Authors: Ciapaite J.; van Eikenhorst G.; Krab K.

Modulation of Metabolite Concentrations with no Net Effect on Fluxes
pp. 17-20(4)
Authors: Cárdenas M.L.; Ortega F.; Cascante M.; Cornish-Bowden A.

Flux Control of the Bacterial Phosphoenolpyruvate:Glucose Phosphotransferase System and the Effect of Diffusion
pp. 21-26(6)
Authors: Francke C.; Westerhoff H.V.; Blom J.G.; Peletier M.A.

Metabolic Control Analysis and Engineering of the Yeast Sterol Biosynthetic Pathway
pp. 27-29(3)
Authors: Groeneveld P.; Rolley N.; Kell D.B.; Kelly S.L.; Kelly D.E.

The Targets of 2,2',5,5'-Tetrachlorobiphenyl in the Respiratory Chain of Rat Liver Mitochondria Revealed by Modular Kinetic Analysis
pp. 31-34(4)
Authors: Mildaziene V.; Nauciene Z.; Krab K.

Analysis of Effects of 2,2',5,5'-Tetrachlorobiphenyl on the Flux Control in Oxidative Phosphorylation System in Rat Liver Mitochondria
pp. 35-40(6)
Authors: Mildaziene V.; Nauciene Z.; Baniene R.; Demin O.; Krab K.

The Extent to Which ATP Demand Controls the Glycolytic Flux Depends Strongly on the Organism and Conditions for Growth
pp. 41-45(5)
Authors: Koebmann B.J.; Westerhoff H.V.; Snoep J.L.; Solem C.; Pedersen M.B.; Nilsson D.; Michelsen O.; Jensen P.R.

Top Down Analysis Ceramide-Induced Mitochondrial Dysfunctions: Role of Mitochondrial Swelling
pp. 47-50(4)
Authors: Leducq N.; de Gannes F.M-P.; Rotureau M-A.B.; Belloc F.; Voisin P.; Canioni P.; Diolez P.

Dynamic Stability of Signal Transduction Networks Depending on Downstream and Upstream Specificity of Protein Kinases
pp. 51-55(5)
Authors: Binder B.; Heinrich R.

Modular Interaction Strengths in Regulatory Networks; An Example
pp. 57-61(5)
Authors: Bruggeman F.J.; Kholodenko B.N.

Equivalence of Branched and Unbranched Michaelian Pathways Concerning Periodic Signal Transmission
pp. 63-66(4)
Authors: Rodríguez Y.; Torralba A.S.; Montero F.

Control Analysis of DNA Microarray Expression Data
pp. 67-71(5)
Authors: Curtis R.K.; Brand M.D.

Quantifying Gene Networks with Regulatory Strengths
pp. 73-77(5)
Authors: de la Fuente A.; Mendes P.

DNA Supercoiling by Gyrase is Linked to Nucleoid Compaction
pp. 79-82(4)
Authors: Stuger R.; Woldringh C.L.; van der Weijden C.C.; Vischer N.O.E.; Bakker B.M.; van Spanning R.J.M.; Snoep J.L.; Weterhoff H.V.

Biphasic Oxygen Kinetics of Cellular Respiration and Linear Oxygen Dependence of Antimycin A Inhibited Oxygen Consumption
pp. 83-87(5)
Authors: Hütter E.; Renner K.; Jansen-Dürr P.; Gnaiger E.

Differences in Flux Control and Reserve Capacity of Cytochrome c Oxidase (COX) in Human Skeletal Muscle and Brain Suggest Different Metabolic Effects of Mild COX Deficiencies
pp. 89-92(4)
Authors: Kudin A.; Vielhaber S.; Elger C.E.; Kunz W.S.

Bax Releases Cytochrome c Preferentially from a Complex Between Porin and Adenine Nucleotide Translocator. Hexokinase Activity Suppresses this Effect
pp. 93-96(4)
Authors: Vyssokikh M.Y.; Zorova L.; Zorov D.; Heimlich G.; Jürgensmeier J.M.; Brdiczka D.

Mitochondrial Function in Glucocorticoid Triggered T-ALL Cells with Transgenic Bcl-2 Expression
pp. 97-101(5)
Authors: Renner K.; Kofler R.; Gnaiger E.

The Metabolic Response of Saccharomyces Cerevisiae to Continuous Heat Stress
pp. 103-106(4)
Authors: Mensonides F.I.C.; Schuurmans J.M.; de Mattos M.J.T.; Hellingwerf K.J.; Brul S.

How to Distinguish Between the Vacuum Cleaner and Flippase Mechanisms of the LmrA Multi-drug Transporter in Lactococcus Lactis
pp. 107-112(6)
Authors: Hofmeyr J.-H.S.; Rohwer J.M.; Snoep J.L.; Westerhoff H.V.; Konings W.N.

ECA: Control in Ecosystems
pp. 113-117(5)
Authors: Westerhoff H.V.; Getz W.M.; Bruggeman F.; Hofmeyr J-H.S.; Rohwer J.M.; Snoep J.L.

Modeling Response of Glycolysis in S. Cerevisiae Cells Harvested at Diauxic Shift
pp. 119-123(5)
Authors: Albers E.; Bakker B.M.; Gustafsson L.

Thermal Stability of Catalases Active in Dormant Saffron (Crocus Sativus L.) Corms
pp. 125-128(4)
Authors: Keyhani J.; Keyhani E.; Kamali J.

Carbon Flux Analysis in a Pantothenate Overproducing Corynebacterium Glutamicum Strain
pp. 129-134(6)
Authors: Chassagnole C.; Létisse F.; Diano A.; Lindley N.D.

Basal Glycogenolysis in Mouse Skeletal Muscle: In Vitro Model Predicts In Vivo Fluxes
pp. 135-139(5)
Authors: Lambeth M.J.; Kushmerick M.J.; Marcinek D.J.; Conley K.E.

Diffusion Barriers for ADP in the Cardiac Cell
pp. 141-144(4)
Authors: Kongas O.; van Beek J.H.G.M.

Sucrose Cycling in Heterotrophic Plant Cell Metabolism: First Step Towards an Experimental Model
pp. 145-149(5)
Authors: Roby C.; Cortès S.; Gromova M.; Le Bail J-L.; Roberts J.K.M.

Theoretical Approach to Description of Time-dependent Nitric Oxide Effects in the Vasculature
pp. 151-155(5)
Authors: Seraya I.P.; Nartsissov Y.R.

Time Dependent Responses of Glycolytic Intermediates in a Detailed Glycolytic Model of Lactococcus Lactis During Glucose Run-Out Experiments
pp. 157-161(5)
Authors: Hoefnagel M.H.N.; van der Burgt A.; Martens D.E.; Hugenholtz J.; Snoep J.L.

Catalytic Properties of Three L-Lactate Dehydrogenases From Saffron Corms (Crocus Sativus L.)
pp. 163-166(4)
Authors: Keyhani E.; Sattarahmady N.

Regulation Analysis of Contractile ATPase Flux in Skeletal Muscle
pp. 167-170(4)
Author: Jeneson J.A.L.

Identification of Subcellular Energy Fluxes by P NMR Spectroscopy in the Perfused Heart: Contractility Induced Modifications of Energy Transfer Pathways
pp. 171-176(6)
Authors: Joubert F.; Mazet J.-L.; Mateo P.; Hoerter J.A.

Modeling the Energy Transfer Pathways. Creatine Kinase Activities and Heterogeneous Distribution of ADP in the Perfused Heart
pp. 177-182(6)
Authors: Joubert F.; Hoerter J.A.; Mazet J.-L.

On the Role of Mi-CK and VDAC in Mitochondrial Function of Heart Muscle Cells
pp. 183-186(4)
Authors: ter Veld F.; Bruggeman F.; Jeneson J.; Nicolay K.

Muscle Oxygenation and ATP Turnover When Blood Flow is Impaired by Vascular Disease
pp. 187-191(5)
Authors: Kemp G.; Roberts N.; Bimson W.; Bakran A.; Frostick S.

Mitochondria Do Not Control Heart Bioenergetics
pp. 193-196(4)
Authors: Diolez P.; Raffard G.; Simon C.; Leducq N.; Dos Santos P.; Canioni P.

Effect of Enzyme Deficiencies on Oxidative Phosphorylation: From Isolated Mitochondria to Intact Tissues. Theoretical Studies
pp. 197-202(6)
Author: Korzeniewski B.

Experimental Supply-Demand Analysis of Anaerobic Yeast Energy Metabolism
pp. 203-209(7)
Authors: Kroukamp O.; Rohwer J.M.; Hofmeyr J-H.S.; Snoep J.L.

Sensitivity Analysis of Metabolic Cascades Catalyzed by Bifunctional Enzymes
pp. 211-215(5)
Authors: Ortega F.; Ehrenberg M.; Acerenza L.; Westerhoff H.V.; Mas F.; Cascante M.

ThermoKinetic Modelling: Membrane Potential as a Dependent Variable in Ion Transport Processes
pp. 217-225(9)
Authors: Rohwer J.M.; Kuchel P.W.; Maher A.D.

Virtual Mitochondria : Metabolic Modelling and Control
pp. 227-232(6)
Authors: Aimar-Beurton M.; Korzeniewski B.; Letellier T.; Ludinard S.; Mazat J-P.; Nazaret C.

Combinatorial Complexity of Pathway Analysis in Metabolic Networks
pp. 233-236(4)
Authors: Klamt S.; Stelling J.

Metabolomics and Machine Learning: Explanatory Analysis of Complex Metabolome Data Using Genetic Programming to Produce Simple, Robust Rules
pp. 237-241(5)
Author: Kell D.B.

Calculating as Many Fluxes as Possible in Underdetermined Metabolic Networks
pp. 243-248(6)
Authors: Klamt S.; Schuster S.

Modelling Cellular Processes With Python and Scipy
pp. 249-254(6)
Authors: Olivier B.G.; Rohwer J.M.; Hofmeyr J.-H.S.

Loss of Fermentative Capacity in Baker's Yeast can Partly be Explained by Reduced Glucose Uptake Capacity
pp. 255-257(3)
Authors: Rossell S.; van der Weijden C.C.; Kruckeberg A.; Bakker B.M.; Westerhoff H.V.

Java Web Simulation (JWS); A Web Based Database of Kinetic Models
pp. 259-263(5)
Authors: Snoep J.L.; Olivier B.G.