Microarray analysis of chitin elicitation in Arabidopsis thaliana

Authors: Ramonell, Katrina M.¹; Zhang, Bing²; Ewing, Rob M.¹; Chen, Yu³; Xu, Dong³; Stacey, Gary²; Somerville, Shauna

Source: Molecular Plant Pathology, Volume 3, Number 5, September 2002 , pp. 301-311(11)

Publisher: Wiley-Blackwell

Abstract:

Summary

Chitin oligomers, released from fungal cell walls by endochitinase, induce defence and related cellular responses in many plants. However, little is known about chitin responses in the model plant Arabidopsis. We describe here a large-scale characterization of gene expression patterns in Arabidopsis in response to chitin treatment using an Arabidopsis microarray consisting of 2375 EST clones representing putative defence-related and regulatory genes. Transcript levels for 71 ESTs, representing 61 genes, were altered three-fold or more in chitin-treated seedlings relative to control seedlings. A number of transcripts exhibited altered accumulation as early as 10 min after exposure to chitin, representing some of the earliest changes in gene expression observed in chitin-treated plants. Included among the 61 genes were those that have been reported to be elicited by various pathogen-related stimuli in other plants. Additional genes, including genes of unknown function, were also identified, broadening our understanding of chitin-elicited responses. Among transcripts with enhanced accumulation, one cluster was enriched in genes with both the W-box promoter element and a novel regulatory element. In addition, a number of transcripts had decreased abundance, encoding several proteins involved in cell wall strengthening and wall deposition. The chalcone synthase promoter element was identified in the upstream regions of these genes, suggesting that pathogen signals may suppress the expression of some genes. These data indicate that Arabidopsis should be an excellent model to elucidate the mechanisms of chitin elicitation in plant defence.

Document Type: Research article

DOI: http://dx.doi.org/10.1046/j.1364-3703.2002.00123.x

Affiliations: 1: Department of Plant Biology, Carnegie Institution of Washington, 260 Panama Street, Stanford, CA 94305, USA 2: Center for Legume Research, Department of Microbiology, University of Tennessee, Knoxville, TN 37996, USA 3: Genome Science and Technology Graduate School of the University of Tennessee and the Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA

Publication date: 2002-09-01

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