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Publisher: Wiley-Blackwell

Volume 19, Supplement 1, March 2010

Next Generation Molecular Ecology
pp. 1-3(3)
Authors: TAUTZ, DIETHARD; ELLEGREN, HANS; WEIGEL, DETLEF

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Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises
pp. 4-20(17)
Authors: CREER, S.; FONSECA, V. G.; PORAZINSKA, D. L.; GIBLIN-DAVIS, R. M.; SUNG, W.; POWER, D. M.; PACKER, M.; CARVALHO, G. R.; BLAXTER, M. L.; LAMBSHEAD, P. J. D.; THOMAS, W. K.

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Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
pp. 21-31(11)
Authors: STOECK, THORSTEN; BASS, DAVID; NEBEL, MARKUS; CHRISTEN, RICHARD; JONES, MEREDITH D. M.; BREINER, HANS-WERNER; RICHARDS, THOMAS A.

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Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms
pp. 32-40(9)
Authors: MEDINGER, RALPH; NOLTE, VIOLA; PANDEY, RAM VINAY; JOST, STEFFEN; OTTENWÄLDER, BIRGIT; SCHLÖTTERER, CHRISTIAN; BOENIGK, JENS

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Bacterial diversity in a glacier foreland of the high Arctic
pp. 54-66(13)
Authors: SCHÜTTE, URSEL M.E.; ABDO, ZAID; FOSTER, JAMES; RAVEL, JACQUES; BUNGE, JOHN; SOLHEIM, BJØRN; FORNEY, LARRY J.

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Microbial ecological response of the intestinal flora of Peromyscus maniculatus and P. leucopus to heavy metal contamination
pp. 67-80(14)
Authors: COOLON, JOSEPH D.; JONES, KENNETH L.; NARAYANAN, SANJEEV; WISELY, SAMANTHA M.

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Ecogenomics: using massively parallel pyrosequencing to understand virus ecology
pp. 81-88(8)
Authors: ROOSSINCK, MARILYN J.; SAHA, PRASENJIT; WILEY, GRAHAM B.; QUAN, JIAXI; WHITE, JAMES D.; LAI, HONGSHING; CHAVARRÍA, FELIPE; SHEN, GUOAN; ROE, BRUCE A.

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Genome-wide SNP detection in the great tit Parus major using high throughput sequencing
pp. 89-99(11)
Authors: BERS, NIKKIE E. M. VAN; OERS, KEES VAN; KERSTENS, HINDRIK H. D.; DIBBITS, BERT W.; CROOIJMANS, RICHARD P. M. A.; VISSER, MARCEL E.; GROENEN, MARTIEN A. M.

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Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
pp. 100-114(15)
Authors: WHITTALL, J. B.; SYRING, J.; PARKS, M.; BUENROSTRO, J.; DICK, C.; LISTON, A.; CRONN, R.

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Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping
pp. 132-146(15)
Authors: BUGGS, RICHARD J. A.; CHAMALA, SRIKAR; WU, WEI; GAO, LU; MAY, GREGORY D.; SCHNABLE, PATRICK S.; SOLTIS, DOUGLAS E.; SOLTIS, PAMELA S.; BARBAZUK, W. BRAD

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Assembly free comparative genomics of short-read sequence data discovers the needles in the haystack
pp. 147-161(15)
Authors: CANNON, CHARLES H.; KUA, CHAI-SHIAN; ZHANG, D.; HARTING, J.R.

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Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow
pp. 162-175(14)
Authors: WOLF, JOCHEN B. W.; BAYER, TILL; HAUBOLD, BERNHARD; SCHILHABEL, MARKUS; ROSENSTIEL, PHILIP; TAUTZ, DIETHARD

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A genetic basis for the phenotypic differentiation between siscowet and lean lake trout (Salvelinus namaycush)
pp. 176-196(21)
Authors: GOETZ, FREDERICK; ROSAUER, DANIEL; SITAR, SHAWN; GOETZ, GILES; SIMCHICK, CRYSTAL; ROBERTS, STEVEN; JOHNSON, RONALD; MURPHY, CHERYL; BRONTE, CHARLES R.; MACKENZIE, SIMON

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Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes
pp. 197-211(15)
Authors: ELMER, K. R.; FAN, S.; GUNTER, H. M.; JONES, J. C.; BOEKHOFF, S.; KURAKU, S.; MEYER, A.

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Key considerations for measuring allelic expression on a genomic scale using high-throughput sequencing
pp. 212-227(16)
Authors: FONTANILLAS, PIERRE; LANDRY, CHRISTIAN R.; WITTKOPP, PATRICIA J.; RUSS, CARSTEN; GRUBER, JONATHAN D.; NUSBAUM, CHAD; HARTL, DANIEL L.

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Genome-wide analysis of alternative splicing evolution among Mus subspecies
pp. 228-239(12)
Authors: HARR, BETTINA; TURNER, LESLIE M.

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Characterization of a hotspot for mimicry: assembly of a butterfly wing transcriptome to genomic sequence at the HmYb/Sb locus
pp. 240-254(15)
Authors: FERGUSON, LAURA; LEE, SIU FAI; CHAMBERLAIN, NICOLA; NADEAU, NICOLA; JORON, MATHIEU; BAXTER, SIMON; WILKINSON, PAUL; PAPANICOLAOU, ALEXIE; KUMAR, SUJAI; KEE, THUAN-JIN; CLARK, RICHARD; DAVIDSON, CLAIRE; GLITHERO, REBECCA; BEASLEY, HELEN; VOGEL, HEIKO; FFRENCH-CONSTANT, RICHARD; JIGGINS, CHRIS

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Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus
pp. 255-265(11)
Authors: KLOCH, AGNIESZKA; BABIK, WIESŁAW; BAJER, ANNA; SIŃSKI, EDWARD; RADWAN, JACEK

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Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species
pp. 266-276(11)
Authors: KÜNSTNER, AXEL; WOLF, JOCHEN B. W.; BACKSTRÖM, NICLAS; WHITNEY, OSCEOLA; BALAKRISHNAN, CHRISTOPHER N.; DAY, LAINY; EDWARDS, SCOTT V.; JANES, DANIEL E.; SCHLINGER, BARNEY A.; WILSON, RICHARD K.; JARVIS, ERICH D.; WARREN, WESLEY C.; ELLEGREN, HANS

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mlRho – a program for estimating the population mutation and recombination rates from shotgun-sequenced diploid genomes
pp. 277-284(8)
Authors: HAUBOLD, BERNHARD; PFAFFELHUBER, PETER; LYNCH, MICHAEL

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