Environmental Microbiology

Massively parallel rRNA gene sequencing exacerbates the potential for biased community diversity comparisons due to variable library sizes
pp. 285-290(6)
Authors: Gihring, Thomas M.; Green, Stefan J.; Schadt, Christopher W.

Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited
pp. 291-317(27)
Authors: Kämpfer, Peter; Glaeser, Stefanie P.

Towards a taxonomy of <i>Bacteria</i> and <i>Archaea</i> based on interactive and cumulative data repositories
pp. 318-334(17)
Authors: Rosselló-Móra, Ramon

Marine sponges and their microbial symbionts: love and other relationships
pp. 335-346(12)
Authors: Webster, Nicole S.; Taylor, Michael W.

Bacterial species may exist, metagenomics reveal
pp. 347-355(9)
Authors: Caro-Quintero, Alejandro; Konstantinidis, Konstantinos T.

Detecting unknown sequences with DNA microarrays: explorative probe design strategies
pp. 356-371(16)
Authors: Dugat-Bony, Eric; Peyretaillade, Eric; Parisot, Nicolas; Biderre-Petit, Corinne; Jaziri, Faouzi; Hill, David; Rimour, Sébastien; Peyret, Pierre

Multi-locus sequence analysis, taxonomic resolution and biogeography of marine <i>Synechococcus</i>
pp. 372-386(15)
Authors: Mazard, Sophie; Ostrowski, Martin; Partensky, Frédéric; Scanlan, David J.

Massive dominance of <i>Epsilonproteobacteria</i> in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil
pp. 387-404(18)
Authors: Hubert, Casey R. J.; Oldenburg, Thomas B. P.; Fustic, Milovan; Gray, Neil D.; Larter, Stephen R.; Penn, Kevin; Rowan, Arlene K.; Seshadri, Rekha; Sherry, Angela; Swainsbury, Richard; Voordouw, Gerrit; Voordouw, Johanna K.; Head, Ian M.

A novel genus of multicellular magnetotactic prokaryotes from the Yellow Sea
pp. 405-413(9)
Authors: Zhou, Ke; Zhang, Wen-Yan; Yu-Zhang, Kui; Pan, Hong-Miao; Zhang, Sheng-Da; Zhang, Wei-Jia; Yue, Hai-Dong; Li, Ying; Xiao, Tian; Wu, Long-Fei

Vertical stratification of subsurface microbial community composition across geological formations at the Hanford Site
pp. 414-425(12)
Authors: Lin, Xueju; Kennedy, David; Fredrickson, Jim; Bjornstad, Bruce; Konopka, Allan

Global network of specific virus-host interactions in hypersaline environments
pp. 426-440(15)
Authors: Atanasova, Nina S.; Roine, Elina; Oren, Aharon; Bamford, Dennis H.; Oksanen, Hanna M.

Metagenomic analysis of DNA viruses in a wastewater treatment plant in tropical climate
pp. 441-452(12)
Authors: Tamaki, Hideyuki; Zhang, Rui; Angly, Florent E.; Nakamura, Shota; Hong, Pei-Ying; Yasunaga, Teruo; Kamagata, Yoichi; Liu, Wen-Tso

Analysis of two marine metagenomes reveals the diversity of plasmids in oceanic environments
pp. 453-466(14)
Authors: Ma, Yingfei; Paulsen, Ian T.; Palenik, Brian

Genetic structure of three fosmid-fragments encoding 16S rRNA genes of the Miscellaneous Crenarchaeotic Group (MCG): implications for physiology and evolution of marine sedimentary archaea
pp. 467-479(13)
Authors: Li, Ping-Yi; Xie, Bin-Bin; Zhang, Xi-Ying; Qin, Qi-Long; Dang, Hong-Yue; Wang, Xu-Min; Chen, Xiu-Lan; Yu, Jun; Zhang, Yu-Zhong

Microdiversity and evidence for high dispersal rates in the marine actinomycete `<i>Salinispora pacifica</i>'
pp. 480-493(14)
Authors: Freel, Kelle C.; Edlund, Anna; Jensen, Paul R.

Human norovirus occurrence and diversity in the Llobregat river catchment, Spain
pp. 494-502(9)
Authors: Pérez-Sautu, Unai; Sano, Daisuke; Guix, Susana; Kasimir, Georg; Pintó, Rosa M.; Bosch, Albert

TPV1, the first virus isolated from the hyperthermophilic genus <i>Thermococcus</i>
pp. 503-516(14)
Authors: Gorlas, Aurore; Koonin, Eugene V.; Bienvenu, Nadège; Prieur, Daniel; Geslin, Claire

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms
pp. 517-524(8)
Authors: Simister, Rachel L.; Deines, Peter; Botté, Emmanuelle S.; Webster, Nicole S.; Taylor, Michael W.

<i>amoA</i>-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of <i>amoA</i> genes from soils of four different geographic regions
pp. 525-539(15)
Authors: Pester, Michael; Rattei, Thomas; Flechl, Stefan; Gröngröft, Alexander; Richter, Andreas; Overmann, Jörg; Reinhold-Hurek, Barbara; Loy, Alexander; Wagner, Michael

Genome sequences of siphoviruses infecting marine <i>Synechococcus</i> unveil a diverse cyanophage group and extensive phage-host genetic exchanges
pp. 540-558(19)
Authors: Huang, Sijun; Wang, Kui; Jiao, Nianzhi; Chen, Feng