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On-line inference for multiple changepoint problems

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We propose an on-line algorithm for exact filtering of multiple changepoint problems. This algorithm enables simulation from the true joint posterior distribution of the number and position of the changepoints for a class of changepoint models. The computational cost of this exact algorithm is quadratic in the number of observations. We further show how resampling ideas from particle filters can be used to reduce the computational cost to linear in the number of observations, at the expense of introducing small errors, and we propose two new, optimum resampling algorithms for this problem. One, a version of rejection control, allows the particle filter to choose the number of particles that are required at each time step automatically. The new resampling algorithms substantially outperform standard resampling algorithms on examples that we consider; and we demonstrate how the resulting particle filter is practicable for segmentation of human G+C content.
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Keywords: Direct simulation; Isochores; Particle filtering; Rejection control; Sequential Monte Carlo methods; Stratified sampling

Document Type: Research Article

Affiliations: Lancaster University, UK

Publication date: 01 September 2007

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