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Journal of Computational and Theoretical Nanoscience is an international peer-reviewed journal with a wide-ranging coverage, consolidates research activities in all aspects of computational and theoretical nanoscience into a single reference source. This journal offers scientists and engineers peer-reviewed research papers in all aspects of computational and theoretical nanoscience and nanotechnology in chemistry, physics, materials science, engineering and biology to publish original full papers and timely state-of-the-art reviews and short communications encompassing the fundamental and applied research.

Publisher: American Scientific Publishers

Volume 4, Numbers 7-8, November/December 2007
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Preface

A Special Issue on Bio-Inspired Computing: Theories and Applications
pp. i-ii(1)
Authors: Mi, Yongli; Cui, Guangzhao; Li, Ning; Pan, Linqiang; Wang, Yan-Feng

Review

A Review on DNA Computing Models
pp. 1219-1230(12)
Authors: Xu, Jin; Tan, Gangjun

Research Articles

Linear Constructions for Hamming Distance of DNA Codes
pp. 1231-1236(6)
Authors: Zhu, Xiangou; Liu, Wenbing; Sun, Chuan; Wu, Wenguo

Maximum Likelihood Estimation and Forecasting of DNA Sequence with Missing Values
pp. 1237-1242(6)
Authors: Jie, Gao; Zhen-Yuan, Xu; Li-Ting, Zhang

Plasmid Resolving the Satisfiability Problem with DNA Computing Models
pp. 1243-1248(6)
Authors: Yin, Zhi-Xiang; Cui, Jian-Zhong; Liu, Wenbin; Shi, Xiao-Hong; Xu, Jin

DNA Encodings Based on Multi-Objective Particle Swarm
pp. 1249-1252(4)
Authors: Zhou, Shihua; Zhang, Qiang; Zhao, Jing; Li, Jinsong

A Recursive Molecular Sticker Algorithm for the Maximal Clique Problem
pp. 1253-1256(4)
Authors: Geng, Xiutang; Xiao, Jianhua; Xu, Jin

An Improved Hopfield Neural Network Algorithm for Computational Codeword Design
pp. 1257-1262(6)
Authors: Wang, Yan-Feng; Cui, Guang-Zhao; Zhang, Xun-Cai; Huang, Bu-Yi

DNA-Based Efficient Evaluation of the S-Boxes' Resistance to Differential Cryptanalysis
pp. 1263-1268(6)
Authors: Chen, Zhihua; Geng, Xiutang; Xiao, Jianhua; Zhang, Xuncai

Application of Local Activity Theory to Chaotic Chemical Reaction Model
pp. 1269-1273(5)
Authors: Huang, Huaiqing; Min, Lequan; Su, Yongmei

An Linear Matrix Inequality Approach to the Global Asymptotic Stability for DelayedCellular Neural Networks
pp. 1274-1277(4)
Authors: Zhang, Qiang; Wei, Xiaopeng; Cui, Guangzhao

Efficient Numerical Methods for Solving the Membrane Equations of Human Ventricular Cell Model
pp. 1278-1282(5)
Authors: Zhang, Yu; Xia, Ling; Gong, Yinglan; Dou, Jianhong

An Ant Colony Algorithm with Global Adaptive Optimization
pp. 1283-1289(7)
Authors: Wang, Jian; Liu, Yanheng; Tian, Daxin

Value Approximation with Least Squares Support Vector Machine in Reinforcement Learning System
pp. 1290-1294(5)
Authors: Wang, Xuesong; Tian, Xilan; Cheng, Yuhu

The Electric Interaction of Myosin VI During Its Directional Motion
pp. 1295-1300(6)
Authors: Li, Chenpu; Han, Yingrong; Zhan, Yong; Zhao, Tongjun; Zhang, Xiuxin

Competition Algorithm of Simulating Natural Tree Growth and Its Application in Curve Fitting
pp. 1301-1304(4)
Authors: Guo, Gaiwen; Huang, Kama

Stochastic Simulations in the Dynamical Model of p53-Mdm2 Feedback Loop Regulated by p14/19ARF
pp. 1305-1310(6)
Authors: Liu, Hui; Han, Yingrong; Zhan, Yong; Zhang, Yuhong; Yuan, Changqing; Liu, Yuzhi; Zhao, Tongjun; Zhuo, Yizhong

A Quantum Chemical and Statistical Study of Benzoic Acid Derivatives with Inhibiting Tyrosinase Activity
pp. 1311-1315(5)
Authors: Lu, Rong; Ma, Haixia; Liu, Weiping; Yan, Biao; Song, Jirong

SIWO: A Hybrid Algorithm Combined with the Conventional SCE and Novel IWO
pp. 1316-1323(8)
Authors: Zhang, Xuncai; Wang, Yunlong; Cui, Guangzhao; Wang, Yanfeng

PSPhos: PK-Specific Phosphorylation Site Prediction Using Profile SVM
pp. 1324-1329(6)
Authors: Wang, Ming-Hui; Li, Chun-Hua; Chen, Wei-Zu; Wang, Cun-Xin

Bioinformatics Analysis of Mutant Structure and Functional Sites of Foot-and-Mouth Disease Virus RNA-Dependent RNA Polymerase
pp. 1330-1336(7)
Authors: Zeng, Tao; Mo, Zhongxi

Predicting Protein Function Based on the Topological Structure of Protein Interaction Networks
pp. 1337-1343(7)
Authors: Sun, Dengdi; Hu, Maolin

Multi-Level Immunity-Based Intrusion Detection and Risk Evaluation Model
pp. 1344-1350(7)
Authors: Liu, Caiming; Li, Tao; Peng, Lingxi; Zeng, Jinquan; Zhao, Hui; Lu, Zhengtian

Interactions of Ligands with Class-II HMG-CoA Reductase of Streptococcus Pneumoniae by Homology Modeling and Molecular Dynamic Simulations
pp. 1351-1357(7)
Authors: Zhang, Qing Y.; Liu, Kai; Cui, Guzhen; Lin, Xiang Y.; Wan, Jian; Liu, De I.

Comparing the Structures of Protein-Protein Interfaces Using Similarity Search Based on Histograms
pp. 1358-1364(7)
Authors: Xiang, Junping; Hu, Maolin

Modeling Plant mRNA Poly(A) Sites: Software Design and Implementation
pp. 1365-1368(4)
Authors: Ji, Guoli; Wu, Xiaohui; Zheng, Jianti; Shen, Yingjia; Li, Qingshun Quinn

A Fast Approach to Protein Structure Alignment
pp. 1369-1374(6)
Authors: Fang, Hong; Xiang, Junping; Hu, Maolin

A Novel Optical Fiber Bundle Displacement Sensor Based on Artificial Neural Networks
pp. 1375-1379(5)
Authors: Lujun, Cui; Youping, Chen; Gang, Zhang; Zude, Zhou

Probabilistic Dominance-Based Multi-Objective Immune Optimization Algorithm in Noisy Environments
pp. 1380-1387(8)
Authors: Zhang, Zhuhong; Tu, Xin

A Distributed Immune Agent System Modeling and Application
pp. 1388-1393(6)
Authors: Guangzhu, Chen; Zhencai, Zhu; Dunwei, Gong; Chunfeng, Shen

An Immune System-Inspired Paradigm for Anomaly Detection
pp. 1394-1398(5)
Authors: Peng, Lingxi; Li, Tao; Liu, Xiaojie; Chen, Yuefeng; Liu, Caiming; Liu, Sunjun

An Immune Memory Clonal Strategy Algorithm
pp. 1399-1404(6)
Authors: Ruochen, Liu; Licheng, Jiao

Modelling and Constructing of Intelligent Physiological Engine Merging Artificial Life for Virtual Plants
pp. 1405-1411(7)
Authors: Qu, Hongchun; Zhu, Qingsheng; Deng, Qingqing; Zeng, Lingqiu; Ge, Liang

Modeling and Analyzing an Inductive Contactless Power Transfer System for Artificial Hearts Using the Generalized State Space Averaging Method
pp. 1412-1416(5)
Authors: Fang, Wan; Tang, Houjun; Liu, Wei

Feature Subset Selection for Support Vector Machine Through Separability Assessment in Kernel-Defined Feature Space
pp. 1417-1425(9)
Authors: Tang, Yaohua; Gao, Jinghuai; Yang, Cunxiang; Yang, Xiaoliang

Improving the Performance of Bio-Entity Name Recognition in Biomedical Literature via the Contextual Cues
pp. 1426-1431(6)
Authors: Yang, Zhihao; Lin, Hongfei; Li, Yanpeng

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