Initial Velocity, Spectral, and pH Studies of the Serine-Glyoxylate Aminotransferase from Hyphomicrobiuim methylovorum

Authors: Karsten W.E.¹; Ohshiro T.²; Izumi Y.²; Cook P.F.¹

Source: Archives of Biochemistry and Biophysics, Volume 388, Number 2, April 2001 , pp. 267-275(9)

Publisher: Academic Press

Abstract:

Serine-glyoxylate aminotransferase (SGAT) from Hyphomicrobium methylovorum is a pyridoxal 5-phosphate (PLP) enzyme that catalyzes the interconversion of l-serine and glyoxylate to hydroxypyruvate and glycine. The initial velocity and dead-end inhibition patterns are consistent with a ping-pong kinetic mechanism. The K_m values for l-serine and the alternative substrate ketomalonate are 0.28 ± 0.02 and 1.13 ± 0.08 mM, respectively. The spectrum of SGAT at pH 7.5 shows an absorbance maximum at 413 nm and a shoulder centered at 330 nm corresponding to the ketoenamine and enolimine forms of the protonated Schiff's base with the enolimine tautomer predominating. As determined by the changes in the enzyme absorbance spectrum the enzyme can be converted from the E–PLP to the E–pyridoxamine 5-phosphate (E–PMP) form on addition of l-serine. The enzyme can subsequently be converted back to E–PLP by addition of glyoxylate or hydroxypyruvate. The enzyme displays a pH-dependent spectral change with a pK of about 8.2 which is ascribed to the ionization of an enzymatic residue that effects the tautomeric equilibrium between the ketoenamine and enolimine tautomers of the protonated aldimine. The V/K_L-serine pH profile displays two pK values at pH 7.5 and 8.5 with limiting slopes of 1 and -1. The V/K_ketomalonate pH profile displays one pK at 8.2 on the basic side with a limiting slope of 1 and the log K_{I oxalate} pH profile shows one pK on the basic side at pH 7.2. The data suggest the active enzyme is the protonated aldimine and an enzymatic base with a pK of 7.5 accepts a proton from the -amine of substrate to initiate catalysis. Copyright 2001 Academic Press.

Keywords: aminotransferase; kinetic mechanism; chemical mechanism; UV–; vis spectrophotometry; pyridoxal 5-phosphate; pH studies

Language: English

Document Type: Research article

Affiliations: 1: Department of Chemistry and Biochemistry, University of Oklahoma, 620 Parrington Oval, Norman, Oklahoma, 73019 2: Faculty of Engineering, Tottori University, Tottori, 680, Japan

Publication date: 2001-04-01

• In this: publication
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• In this Subject: Anatomy & Physiology ,  Biology ,  Biochemistry
• By this author: Karsten W.E. ;  Ohshiro T. ;  Izumi Y. ;  Cook P.F.

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