cluML: A Markup Language for Clustering and Cluster Validity Assessment of Microarray Data

Authors: Bolshakova, Nadia; Cunningham, Pádraig

Source: Applied Bioinformatics, Volume 4, Number 3, 2005 , pp. 211-213(3)

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Abstract:

cluML is a new markup language for microarray data clustering and cluster validity assessment. The XML-based format has been designed to address some of the limitations observed in traditional formats, such as inability to store multiple clustering (including biclustering) and validation results within a dataset. cluML is an effective tool to support biomedical knowledge representation in gene expression data analysis. Although cluML was developed for DNA microarray analysis applications, it can be effectively used for the representation of clustering and for the validation of other biomedical and physical data that has no limitations.

Availability: cluML is freely available from http://www.cs.tcd.ie/Nadia.Bolshakova/cluML.html

Contact: Nadia Bolshakova (Nadia.Bolshakova@cs.tcd.ie)

Keywords: Bioinformatics; Genomics

Document Type: Research article

Affiliations: 1: Department of Computer Science, Trinity College, Dublin, Ireland

Publication date: 2005-01-01