Applied Bioinformatics

Challenges and Opportunities for Biological Language Modelling in Biomedical High-Throughput Genomic and Proteomic Informatics
pp. 77-80(4)
Author: Adis International Limited,

Gene Structure Prediction Using an Orthologous Gene of Known Exon-Intron Structure
pp. 81-90(10)
Authors: Seneff, Stephanie; Wang, Chao; Burge, Christopher B.

Reusing Microarrays within Closely Related Species: Experimental Validation Through Phylogenetic Inference
pp. 91-96(6)
Authors: Jagan, Deepika; Singh, Gautam B.

Five Hierarchical Levels of Sequence-Structure Correlation in Proteins
pp. 97-104(8)
Authors: Bystroff, Christopher; Shao, Yu; Yuan, Xin

Natively Disordered Proteins: Functions and Predictions
pp. 105-113(9)
Authors: Romero, Pedro; Obradovic, Zoran; Dunker, A. Keith

A Study of Statistical Methods for Function Prediction of Protein Motifs
pp. 115-124(10)
Authors: Tao, Tao; Cheng Xiang Zhai,; Lu, Xinghua; Fang, Hui

Extracting Hydrogen-Bond Signature Patterns from Protein Structure Data
pp. 125-135(11)
Authors: Prasad, Tejasvini; Subramanian, Tamilselvi; Hariharaputran, Sridhar; Chaitra, H.S.; Chandra, Nagasuma

A Sequence Alignment-Independent Method for Protein Classification
pp. 137-148(12)
Authors: Vries, John K.; Munshi, Rajan; Tobi, Dror; Klein-Seetharaman, Judith; Benos, Panayiotis V.; Bahar, Ivet

MSAT: A Multiple Sequence Alignment Tool Based on TOPS
pp. 149-158(10)
Authors: Ren, Te; Veeramalai, Mallika; Aik Choon Tan,; Gilbert, David

Constructing Sequence Alignments from a Markov Decision Model with Estimated Parameter Values
pp. 159-165(7)
Authors: Hunt, Fern Y.; Kearsley, Anthony J.; O'Gallagher, Agnes

Inferring Property Selection Pressure from Positional Residue Conservation
pp. 167-179(13)
Authors: Hoberman, Rose; Klein-Seetharaman, Judith; Rosenfeld, Roni

Haplotype Parsing: Methods for Extracting Information from Human Genetic Variations
pp. 181-191(11)
Author: Schwartz, Russell

BLMT: Statistical Sequence Analysis Using N-Grams
pp. 193-200(8)
Authors: Ganapathiraju, Madhavi; Manoharan, Vijayalaxmi; Klein-Seetharaman, Judith